Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CSS0022248 hypothetical protein JCGZ_04749 [Jatropha curcas] Chr6 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG4G10310 LG-4 - View
Aethionema arabicum Aa31LG7G7300 LG-7 - View
Actinidia chinensis Actinidia36633 Lachesis_group4 + View
Actinidia chinensis Actinidia12388 Lachesis_group14 - View
Arabidopsis lyrata AL1G37040 scaffold_1 - View
Arabidopsis lyrata AL2G30090 scaffold_2 + View
Avicennia marina MSTRG.2137 ScioBoG_102834_HRSCAF_103055 + View
Avicennia marina MSTRG.13619 ScioBoG_18778_HRSCAF_18863 - View
Arabidopsis thaliana AT1G70650 Ran BP2/NZF zinc finger-like superfamily protein Ran BP2/NZF zinc finger-like superfamily protein%3B FUNCTIONS IN: binding%2C zinc ion binding%3B LOCATED IN: mitochondrion%2C intracellular%3B EXPRESSED IN: 6 plant structures%3B EXPRESSED DURING: F mature embryo stage%2C petal differentiation and expansion stage%2C E expanded cotyledon stage%2C D bilateral stage%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C RanBP2-type (InterPro:IPR001876)%3B BEST Arabidopsis thaliana protein match is: zinc finger (Ran-binding) family protein (TAIR:AT1G55040.1)%3B Has 972 Blast hits to 707 proteins in 149 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 300%3B Fungi - 88%3B Plants - 413%3B Viruses - 0%3B Other Eukaryotes - 171 (source: NCBI BLink). Ran BP2/NZF zinc finger-like superfamily protein%3B FUNCTIONS IN: binding%2C zinc ion binding%2C small conjugating protein ligase activity%3B INVOLVED IN: regulation of protein metabolic process%2C post-translational protein modification%3B LOCATED IN: mitochondrion%2C intracellular%3B EXPRESSED IN: 6 plant structures%3B EXPRESSED DURING: F mature embryo stage%2C petal differentiation and expansion stage%2C E expanded cotyledon stage%2C D bilateral stage%3B CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135)%2C Ubiquitin-conjugating enzyme%2C E2 (InterPro:IPR000608)%2C Zinc finger%2C RanBP2-type (InterPro:IPR001876)%3B BEST Arabidopsis thaliana protein match is: MMS ZWEI homologue 2 (TAIR:AT1G70660.1). Chr1 + View
Arabidopsis thaliana AT1G23260 MMS ZWEI homologue 1 MMZ1/UEV1A encodes a protein that may play a role in DNA damage responses and error-free post-replicative DNA repair by participating in lysine-63-based polyubiquitination reactions. UEV1A can form diubiquitin and triubiquitin chains in combination with UBC13A/UBC35 in vitro. It can also functionally complement an mms2 mutation in budding yeast%2C both by increasing mms2 mutant viability in the presence of the DNA damaging agent MMS%2C and by reducing the rate of spontaneous DNA mutation. However%2C a combination of MMZ1/UEV1A and UBC13A do not do a good job of rescuing an mms2 ubc13 double mutant in yeast. MMZ1/UEV1A transcripts are found at low levels in most plant organs%2C but cannot be detected in the pollen. Transcript levels do not appear to be stress-inducible. The uev1a-1 mutant shows normal sensitivity to MMS in germination assays suggesting that UEV1A is not required for DNA damage tolerance during this developmental stage. MMS ZWEI homologue 1 (MMZ1)%3B CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135)%2C Ubiquitin-conjugating enzyme%2C E2 (InterPro:IPR000608)%3B BEST Arabidopsis thaliana protein match is: MMS ZWEI homologue 2 (TAIR:AT1G70660.1)%3B Has 4438 Blast hits to 4438 proteins in 315 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 2178%3B Fungi - 730%3B Plants - 896%3B Viruses - 0%3B Other Eukaryotes - 634 (source: NCBI BLink). Chr1 - View
Amborella trichopoda ATR0564G002 AmTr_v1.0_scaffold00010 + View
Brassica carinata BcaB05g24601 ChrB05 + View
Brassica carinata BcaC03g15216 ChrC03 + View
Brassica carinata BcaC05g26234 ChrC05 - View
Brassica napus A02p16760 A02 + View
Brassica napus C05p22470 C05 - View
Brassica napus A09p41520 A09 + View
Brassica napus C02p28020 C02 + View
Brassica oleracea BolC5t30945H C5 - View
Brassica oleracea BolC2t08845H C2 + View
Brassica rapa BraA02t06730Z A02 + View
Brassica rapa BraA07t29148Z A07 + View
Brassica rapa BraA09t39643Z A09 + View
Cannabis sativa CANSAT01G1873 NC_044373.1 - View
Corylus avellana Haze_10899 Similar to UEV1B: Ubiquitin-conjugating enzyme E2 variant 1B (Arabidopsis thaliana OX%3D3702) 9 - View
Coffea canephora Cc11_g07010 Ubiquitin-conjugating enzyme E2 variant 1A chr11 - View
Citrus clementina Ciclev10017021m.g scaffold_2 + View
Carpinus fangiana Cfa015007 Cfa06 - View
Cardamine hirsuta CARHR023700 Ubiquitin-conjugating enzyme 2 Chr1 - View
Cardamine hirsuta CARHR063910 Ubiquitin-conjugating enzyme E2 variant 1B Chr2 + View
Carya illinoinensis CiPaw.06G050400 PTHR24067//PTHR24067:SF147 - UBIQUITIN-CONJUGATING ENZYME E2 // SUBFAMILY NOT NAMED Chr06 - View
Citrullus lanatus ClCG01G006500 Ubiquitin-conjugating enzyme E2 variant 1B CG_Chr01 - View
Cucumis melo MELO3C005277.2 Ubiquitin-conjugating enzyme E2 variant 1B chr09 + View
Carica papaya Cpa.g.sc2.210 supercontig_2 + View
Capsella rubella Carub.0002s1739 PTHR24067//PTHR24067:SF147 - UBIQUITIN-CONJUGATING ENZYME E2 // SUBFAMILY NOT NAMED scaffold_2 + View
Capsella rubella Carub.0001s2284 PTHR24067//PTHR24067:SF118 - UBIQUITIN-CONJUGATING ENZYME E2 // SUBFAMILY NOT NAMED scaffold_1 - View
Cucumis sativus L. CsaV3_5G037040 Ubiquitin-conjugating enzyme E2 chr5 + View
Cucumis sativus L. CsaV3_5G028100 Ubiquitin-conjugating enzyme E2 chr5 - View
Daucus carota DCAR_007326 hypothetical protein DCARv2_Chr2 - View
Davidia involucrata Dinv28082 GWHABJS00000008 + View
Durio zibethinus Duzib251G0707 NW_019167971.1 - View
Durio zibethinus Duzib248G0455 NW_019168048.1 + View
Eucalyptus grandis Eucgr.B02955 Chr02 + View
Erythranthe guttata Migut.E00469 scaffold_5 - View
Eutrema salsugineum Thhalv10019608m.g PTHR23111:SF23 - ZINC FINGER (RAN-BINDING) DOMAIN-CONTAINING PROTEIN scaffold_9 - View
Eutrema salsugineum Thhalv10008977m.g scaffold_5 + View
Fragaria x ananassa FAN17G1867 PTHR24067//PTHR24067:SF147 - UBIQUITIN-CONJUGATING ENZYME E2 // SUBFAMILY NOT NAMED Fvb4-2 - View
Fragaria x ananassa FAN12G2729 PTHR24067//PTHR24067:SF147 - UBIQUITIN-CONJUGATING ENZYME E2 // SUBFAMILY NOT NAMED Fvb4-3 - View
Fragaria x ananassa FAN22G1562 PTHR24067//PTHR24067:SF147 - UBIQUITIN-CONJUGATING ENZYME E2 // SUBFAMILY NOT NAMED Fvb4-1 + View
Fragaria x ananassa FAN07G2421 PTHR24067//PTHR24067:SF147 - UBIQUITIN-CONJUGATING ENZYME E2 // SUBFAMILY NOT NAMED Fvb4-4 - View
Fragaria vesca FvH4_4g33750 PTHR24067//PTHR24067:SF147 - UBIQUITIN-CONJUGATING ENZYME E2 // SUBFAMILY NOT NAMED Fvb4 + View
Gossypium hirsutum Gohir.D01G140800 K10704 - ubiquitin-conjugating enzyme E2 variant (UBE2V) D01 + View
Gossypium hirsutum Gohir.D02G141200 PTHR24067//PTHR24067:SF147 - UBIQUITIN-CONJUGATING ENZYME E2 // SUBFAMILY NOT NAMED D02 + View
Gossypium hirsutum Gohir.A01G147600 K10704 - ubiquitin-conjugating enzyme E2 variant (UBE2V) A01 - View
Gossypium hirsutum Gohir.A03G117500 PTHR24067//PTHR24067:SF147 - UBIQUITIN-CONJUGATING ENZYME E2 // SUBFAMILY NOT NAMED A03 + View
Glycine max Glyma.05G235000 PTHR24067//PTHR24067:SF117 - UBIQUITIN-CONJUGATING ENZYME E2 // UBIQUITIN-CONJUGATING ENZYME E2 VARIANT 1D Gm05 + View
Glycine max Glyma.09G124800 PTHR24067//PTHR24067:SF46 - UBIQUITIN-CONJUGATING ENZYME E2 // LD28904P Gm09 - View
Glycine max Glyma.08G042500 PTHR24067//PTHR24067:SF117 - UBIQUITIN-CONJUGATING ENZYME E2 // UBIQUITIN-CONJUGATING ENZYME E2 VARIANT 1D Gm08 + View
Gossypium raimondii Gorai.002G173100 Chr02 + View
Gossypium raimondii Gorai.005G158400 Chr05 + View
Helianthus annuus HanXRQChr17g0567291 Probable MMS ZWEI homologue 1 HanXRQChr17 + View
Hydrangea macrophylla Hma1.2p1_0089F.1_g045505 Hma1.2p1_0089F.1 - View
Lupinus albus Lalb_Chr16g0387651 K10704 - ubiquitin-conjugating enzyme E2 variant (UBE2V) Lalb_Chr16 + View
Lupinus albus Lalb_Chr05g0222271 PTHR24067:SF46 - LD28904P Lalb_Chr05 + View
Lotus japonicus Lj4g0013963 K10704 - ubiquitin-conjugating enzyme E2 variant (UBE2V) chr4 + View
Lactuca sativa Lsat_1_v5_gn_3_53341 Lsat_1_v8_lg_3 + View
Malus domestica MD13G1029400 MMS ZWEI homologue 1 Chr13 + View
Malus domestica MD16G1020200 MMS ZWEI homologue 1 Chr16 + View
Manihot esculenta Manes.15G133400 Chromosome15 - View
Manihot esculenta Manes.17G083100 Chromosome17 - View
Medicago truncatula Medtr8g105010 ubiquitin-conjugating enzyme chr8 - View
Nelumbo nucifera Nn3g18343 chr3 - View
Nicotiana tabacum Nitab4.5_0000916g0010 Ubiquitin-conjugating enzyme/RWD-like, Ubiquitin-conjugating enzyme, E2 Nitab4.5_0000916 + View
Petunia axillaris Peaxi162Scf00376g00822 Ubiquitin-conjugating enzyme E2 variant 1A Peaxi162Scf00376 - View
Punica granatum PGR102G0935 NC_045129.1 + View
Prunus persica Prupe.1G332100 PTHR24067:SF117 - UBIQUITIN-CONJUGATING ENZYME E2 VARIANT 1D Pp01 - View
Pisum sativum Psat7g008560 Ubiquitin-conjugating enzyme chr7LG7 - View
Populus trichocarpa Potri.008G133900 PTHR24067//PTHR24067:SF147 - UBIQUITIN-CONJUGATING ENZYME E2 // SUBFAMILY NOT NAMED Chr08 - View
Populus trichocarpa Potri.010G107700 PTHR24067//PTHR24067:SF147 - UBIQUITIN-CONJUGATING ENZYME E2 // SUBFAMILY NOT NAMED Chr10 + View
Phaseolus vulgaris Phvul.002G320000 PTHR24067//PTHR24067:SF147 - UBIQUITIN-CONJUGATING ENZYME E2 // SUBFAMILY NOT NAMED Chr02 - View
Phaseolus vulgaris Phvul.003G020400 PTHR24067:SF117 - UBIQUITIN-CONJUGATING ENZYME E2 VARIANT 1D Chr03 + View
Quercus lobata QL03p035128 3 - View
Rosa chinensis RcHm_v2.0_Chr4g0443281 RcHm_v2.0_Chr4 + View
Rhododendron simsii Rhsim09G0091300 chr09 + View
Striga asiatica SGA_v2.0_scaffold139G35411 scaffold139 - View
Salvia bowleyana SalBow2G2552 GWHASIU00000007 - View
Salix brachista Sabra10G0078900 GWHAAZH00000010 + View
Sechium edule Sed0022711 LG06 + View
Sechium edule Sed0010129 LG03 + View
Solanum lycopersicum Solyc04g007970.3 Ubiquitin-conjugating enzyme variant (AHRD V3.3 *** V5KX13_SOLLC) SL4.0ch04 - View
Schrenkiella parvula Sp1g20720 PTHR24067//PTHR24067:SF118 - UBIQUITIN-CONJUGATING ENZYME E2 // SUBFAMILY NOT NAMED ch1-1 - View
Solanum pennellii Sopen04g003110 Ran BP2/NZF zinc finger-like superfamily protein | FUNCTIONS IN: binding, zinc ion binding, small conjugating protein ligase activity | INVOLVED IN: regulation of protein metabolic process, post-translational protein modification | LOCATED IN: mitochondrion, intracellular | EXPRESSED IN: 6 plant structures | EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage | CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like , Ubiquitin-conjugating enzyme, E2 , Zinc finger, RanBP2-type | BEST Arabidopsis thaliana protein match is: MMS ZWEI homologue 2 . Spenn-ch04 - View
Solanum tuberosum PGSC0003DMG401029471 Ubiquitin-conjugating enzyme 2 ST4.03ch04 - View
Trochodendron aralioides TAR371G0075 group13 + View
Trochodendron aralioides TAR629G0015 group0 - View
Theobroma cacao Thecc.02G291300 Chromosome_2 - View
Tarenaya hassleriana THA.LOC104822990 ubiquitin-conjugating enzyme E2 variant 1A isoform X1 NW_010966822.1 + View
Tarenaya hassleriana THA.LOC104809097 ubiquitin-conjugating enzyme E2 variant 1A-like isoform X1 NW_010960187.1 + View
Tripterygium wilfordii TWI53G1502 NC_052244.1 - View
Tripterygium wilfordii TWI74G1500 NC_052234.1 + View
Tripterygium wilfordii TWI77G0182 NC_052236.1 - View
Vaccinium macrocarpon vmacro22454 Similar to UEV1A: Ubiquitin-conjugating enzyme E2 variant 1A (Arabidopsis thaliana OX%3D3702) chr8_Vaccinium_macrocarpon_Stevens_v1 + View
Vigna mungo VMungo0251G1694 CM024069.1 - View
Vigna mungo VMungo1215G0997 CM024074.1 + View
Vitis vinifera GSVIVG01011671001 chr1 - View