Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CSS0041051 PREDICTED: protein SHORT-ROOT isoform X1 [Vitis vinifera] Chr2 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG6G14550 LG-6 + View
Acer truncatum Atru.chr3.1010 chr3 + View
Actinidia chinensis Actinidia11992 Lachesis_group11 + View
Actinidia chinensis Actinidia16427 Lachesis_group25 + View
Arabidopsis lyrata AL7G13120 scaffold_7 - View
Avicennia marina MSTRG.15351 ScioBoG_19538_HRSCAF_19626 - View
Avicennia marina MSTRG.23671 ScioBoG_3895_HRSCAF_3912 - View
Avicennia marina MSTRG.2819 ScioBoG_102835_HRSCAF_103059 - View
Amaranthus hybridus Ah.02g125410 AmaHy_arrow1_Scaffold_2 - View
Aquilegia oxysepala Aqoxy6G02611 CHR06 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.8N5BV1 PTHR31636:SF9 - PROTEIN SHORT-ROOT arahy.Tifrunner.gnm1.Arahy.15 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.T0P5W2 PTHR31636:SF9 - PROTEIN SHORT-ROOT arahy.Tifrunner.gnm1.Arahy.05 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.GYJ6B7 PTHR31636:SF9 - PROTEIN SHORT-ROOT arahy.Tifrunner.gnm1.Arahy.01 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.TICU69 PTHR31636:SF9 - PROTEIN SHORT-ROOT arahy.Tifrunner.gnm1.Arahy.11 - View
Arabidopsis thaliana AT4G37650 GRAS family transcription factor Involved in radial organization of the root and shoot axial organs. Essential for normal shoot gravitropism. The protein moves in a highly specific manner from the cells of the stele in which it is synthesized outward. Movement requires sequences within the GRAS and VHIID domains. SHORT ROOT (SHR)%3B CONTAINS InterPro DOMAIN/s: Transcription factor GRAS (InterPro:IPR005202)%3B BEST Arabidopsis thaliana protein match is: GRAS family transcription factor (TAIR:AT3G49950.1)%3B Has 2470 Blast hits to 2429 proteins in 304 species: Archae - 0%3B Bacteria - 4%3B Metazoa - 9%3B Fungi - 15%3B Plants - 2427%3B Viruses - 0%3B Other Eukaryotes - 15 (source: NCBI BLink). Chr4 + View
Amborella trichopoda ATR1153G090 AmTr_v1.0_scaffold00086 + View
Brassica carinata BcaB01g00649 ChrB01 - View
Brassica carinata BcaB02g09920 ChrB02 - View
Brassica napus A01p01360 A01 - View
Brassica napus A03p65430 A03 + View
Brassica napus C07p62530 C07 + View
Brassica napus C01p01520 C01 - View
Brassica oleracea BolC7t46668H C7 + View
Brassica oleracea BolC1t00149H C1 - View
Brassica oleracea BolC3t20168H C3 - View
Brassica rapa BraA03t15595Z A03 + View
Beta vulgaris EL10Ac6g15619 PTHR31636:SF9 - PROTEIN SHORT-ROOT Chr6_EL10_PGA_scaffold0 - View
Cicer arietinum L. Ca_22106_v3 Ca_LG7_v3 - View
Cicer arietinum L. Ca_24693_v3 Ca_LG8_v3 - View
Corylus avellana Haze_15283 Similar to SHR: Protein SHORT-ROOT (Arabidopsis thaliana OX%3D3702) 11 - View
Citrus clementina Ciclev10025470m.g scaffold_7 - View
Ceratophyllum demersum CDE07G0887 5 + View
Cardamine hirsuta CARHR246030 GRAS family transcription factor Chr7 + View
Carya illinoinensis CiPaw.01G004500 PTHR31636//PTHR31636:SF9 - FAMILY NOT NAMED // PROTEIN SHORT-ROOT Chr01 - View
Carya illinoinensis CiPaw.02G002600 PTHR31636//PTHR31636:SF9 - FAMILY NOT NAMED // PROTEIN SHORT-ROOT Chr02 - View
Corchorus olitorius COL.COLO4_11577 Transcription factor GRAS AWUE01014716.1 + View
Carica papaya Cpa.g.sc6.17 supercontig_6 - View
Chenopodium quinoa AUR62029264 CIGR1: Chitin-inducible gibberellin-responsive protein 1 C_Quinoa_Scaffold_2939 + View
Chenopodium quinoa AUR62040238 SHR: Protein SHORT-ROOT C_Quinoa_Scaffold_4447 - View
Capsella rubella Carub.0007s0262 PTHR31636:SF9 - PROTEIN SHORT-ROOT scaffold_7 - View
Daucus carota DCAR_010820 hypothetical protein DCARv2_Chr3 - View
Davidia involucrata Dinv04049 GWHABJS00000021 + View
Durio zibethinus Duzib187G1637 NW_019167860.1 - View
Durio zibethinus Duzib264G0242 NW_019167960.1 - View
Durio zibethinus Duzib147G0275 NW_019168470.1 - View
Erigeron canadensis ECA246G2763 Conyza_canadensis_scaffold:8 - View
Eucalyptus grandis Eucgr.I00704 Chr09 - View
Erythranthe guttata Migut.H00348 scaffold_8 - View
Eutrema salsugineum Thhalv10024885m.g PTHR31636:SF9 - PROTEIN SHORT-ROOT scaffold_1 - View
Fragaria x ananassa FAN19G2122 PTHR31636//PTHR31636:SF9 - FAMILY NOT NAMED // PROTEIN SHORT-ROOT Fvb1-4 + View
Fragaria x ananassa FAN26G0355 PTHR31636:SF9 - PROTEIN SHORT-ROOT Fvb1-2 + View
Fragaria x ananassa FAN27G0434 PTHR31636//PTHR31636:SF10 - FAMILY NOT NAMED // SCARECROW-LIKE PROTEIN 1 Fvb2-1 + View
Fragaria x ananassa FAN23G0064 PTHR31636//PTHR31636:SF9 - FAMILY NOT NAMED // PROTEIN SHORT-ROOT Fvb1-3 + View
Fragaria x ananassa FAN28G0549 PTHR31636:SF9 - PROTEIN SHORT-ROOT Fvb1-1 - View
Fragaria vesca FvH4_1g17690 PTHR31636:SF9 - PROTEIN SHORT-ROOT Fvb1 + View
Gossypium hirsutum Gohir.A12G077400 PTHR31636:SF9 - PROTEIN SHORT-ROOT A12 + View
Gossypium hirsutum Gohir.D12G075600 PTHR31636:SF9 - PROTEIN SHORT-ROOT D12 - View
Gossypium hirsutum Gohir.A11G214900 PTHR31636:SF9 - PROTEIN SHORT-ROOT A11 - View
Gossypium hirsutum Gohir.D03G028800 PTHR31636:SF9 - PROTEIN SHORT-ROOT D03 + View
Gossypium hirsutum Gohir.A02G151600 PTHR31636:SF9 - PROTEIN SHORT-ROOT A02 - View
Glycine max Glyma.11G047700 PTHR31636:SF9 - PROTEIN SHORT-ROOT Gm11 - View
Glycine max Glyma.17G160800 PTHR31636:SF9 - PROTEIN SHORT-ROOT Gm17 - View
Glycine max Glyma.01G194200 PTHR31636:SF9 - PROTEIN SHORT-ROOT Gm01 + View
Gossypium raimondii Gorai.008G083500 Chr08 - View
Gossypium raimondii Gorai.003G030400 Chr03 + View
Gossypium raimondii Gorai.007G056200 Chr07 - View
Hydrangea macrophylla Hma1.2p1_0852F.1_g228520 Hma1.2p1_0852F.1 + View
Lupinus albus Lalb_Chr16g0378871 PTHR31636:SF9 - PROTEIN SHORT-ROOT Lalb_Chr16 + View
Lupinus albus Lalb_Chr09g0323601 PTHR31636//PTHR31636:SF9 - FAMILY NOT NAMED // PROTEIN SHORT-ROOT Lalb_Chr09 + View
Lupinus albus Lalb_Chr05g0213701 PTHR31636//PTHR31636:SF9 - FAMILY NOT NAMED // PROTEIN SHORT-ROOT Lalb_Chr05 + View
Lotus japonicus Lj4g0016092 PTHR31636:SF51 - SCARECROW-LIKE PROTEIN 32 chr4 - View
Lotus japonicus Lj2g0006824 PTHR31636//PTHR31636:SF9 - FAMILY NOT NAMED // PROTEIN SHORT-ROOT chr2 - View
Lonicera japonica Lj4P163T26 GWHAAZE00000004 + View
Lactuca sativa Lsat_1_v5_gn_2_82741 PTHR31636:SF9 - PROTEIN SHORT-ROOT Lsat_1_v8_lg_2 - View
Lactuca sativa Lsat_1_v5_gn_3_86920 PTHR31636:SF9 - PROTEIN SHORT-ROOT Lsat_1_v8_lg_3 + View
Magnolia biondii MBI16_g17953_MAGBIO AED:0.05 Chr16 + View
Malus domestica MD02G1185900 GRAS family transcription factor Chr02 + View
Manihot esculenta Manes.13G111600 Chromosome13 - View
Manihot esculenta Manes.12G114100 Chromosome12 + View
Medicago truncatula Medtr4g095500 GRAS family transcription factor chr4 - View
Medicago truncatula Medtr5g015490 GRAS family transcription factor chr5 - View
Nicotiana tabacum Nitab4.5_0000142g0030 Transcription factor GRAS Nitab4.5_0000142 + View
Olea europaea Oeu054196.1 scaffold661 + View
Olea europaea Oeu059064.1 chr19 - View
Petunia axillaris Peaxi162Scf00548g00063 GRAS family transcription factor Peaxi162Scf00548 + View
Punica granatum PGR004G0765 NC_045131.1 - View
Prunus persica Prupe.6G220800 PTHR31636:SF9 - PROTEIN SHORT-ROOT Pp06 - View
Papaver somniferum PSO541G4523 NC_039363.1 - View
Papaver somniferum PSO675G0949 NC_039358.1 - View
Phaseolus vulgaris Phvul.003G235000 PTHR31636:SF9 - PROTEIN SHORT-ROOT Chr03 - View
Phaseolus vulgaris Phvul.002G010700 PTHR31636:SF9 - PROTEIN SHORT-ROOT Chr02 - View
Rosa chinensis RcHm_v2.0_Chr2g0108031 RcHm_v2.0_Chr2 + View
Rhododendron simsii Rhsim08G0093500 chr08 - View
Salvia bowleyana SalBow5G2500 GWHASIU00000003 + View
Salvia bowleyana SalBow5G4546 GWHASIU00000003 + View
Simmondsia chinensis Sc03g0002390 GWHAASQ00000003 + View
Sechium edule Sed0013160 LG01 + View
Solanum lycopersicum Solyc02g092370.1 Transcription factor GRAS (AHRD V3.3 *** A0A200QN05_9MAGN) SL4.0ch02 - View
Schrenkiella parvula Sp7g35300 PTHR31636:SF9 - PROTEIN SHORT-ROOT ch7-6 + View
Schrenkiella parvula Sp5g12160 PTHR31636:SF51 - SCARECROW-LIKE PROTEIN 32 ch5-1 - View
Solanum pennellii Sopen02g036920 Involved in radial organization of the root and shoot axial organs. Essential for normal shoot gravitropism. The protein moves in a highly specific manner from the cells of the stele in which it is synthesized outward. Movement requires sequences within the GRAS and VHIID domains. | SHORT ROOT (SHR) | CONTAINS InterPro DOMAIN/s: Transcription factor GRAS | BEST Arabidopsis thaliana protein match is: GRAS family transcription factor Spenn-ch02 - View
Solanum tuberosum PGSC0003DMG400021444 SHORT-ROOT protein ST4.03ch02 - View
Trochodendron aralioides TAR625G0996 group4 + View
Trochodendron aralioides TAR628G1734 group5 - View
Trochodendron aralioides TAR381G1336 group11 + View
Tarenaya hassleriana THA.LOC104807632 protein SHORT-ROOT NW_010963495.1 + View
Tarenaya hassleriana THA.LOC104819881 protein SHORT-ROOT-like NW_010966177.1 + View
Trifolium pratense TPR.G24214 Tp57577_TGAC_v2_LG5 + View
Trifolium pratense TPR.G34859 Tp57577_TGAC_v2_LG2 - View
Tripterygium wilfordii TWI53G1161 NC_052244.1 - View
Vigna mungo VMungo1215G1502 CM024074.1 - View
Vigna mungo VMungo0251G1074 CM024069.1 - View
Vitis vinifera GSVIVG01000107001 chr7 - View