Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CSS0045428 PREDICTED: nuclear poly(A) polymerase 4-like isoform X2 [Vitis vinifera] Chr15 + View
CSS0047224 Poly(A) polymerase 1 isoform 3 [Theobroma cacao] Chr12 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Acer truncatum Atru.chr7.2051 chr7 + View
Actinidia chinensis Actinidia01217 Lachesis_group18 + View
Actinidia chinensis Actinidia21719 Lachesis_group1 + View
Arabidopsis lyrata AL7G18870 scaffold_7 - View
Arabidopsis lyrata AL4G17690 scaffold_4 - View
Avicennia marina MSTRG.11022 ScioBoG_14204_HRSCAF_14270 + View
Aquilegia oxysepala Aqoxy7G01392 CHR07 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.Y407WK PTHR10682//PTHR10682:SF24 - POLY A POLYMERASE // SUBFAMILY NOT NAMED arahy.Tifrunner.gnm1.Arahy.19 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.ZZJI2X PTHR10682:SF22 - NUCLEAR POLY(A) POLYMERASE arahy.Tifrunner.gnm1.Arahy.08 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.P782D8 PTHR10682:SF22 - NUCLEAR POLY(A) POLYMERASE arahy.Tifrunner.gnm1.Arahy.17 + View
Arabidopsis thaliana AT2G25850 poly(A) polymerase 2 Encodes a poly(A) polymerase. Located in the nucleus. poly(A) polymerase 2 (PAPS2)%3B CONTAINS InterPro DOMAIN/s: Poly(A) polymerase (InterPro:IPR014492)%2C Nucleotidyltransferase%2C class I%2C C-terminal-like (InterPro:IPR011068)%2C Poly(A) polymerase%2C central domain (InterPro:IPR007012)%2C Nucleotidyl transferase domain (InterPro:IPR002934)%2C Poly(A) polymerase%2C RNA-binding domain (InterPro:IPR007010)%3B BEST Arabidopsis thaliana protein match is: nuclear poly(a) polymerase (TAIR:AT4G32850.6)%3B Has 814 Blast hits to 806 proteins in 220 species: Archae - 0%3B Bacteria - 13%3B Metazoa - 260%3B Fungi - 214%3B Plants - 191%3B Viruses - 0%3B Other Eukaryotes - 136 (source: NCBI BLink). Chr2 - View
Brassica napus A01p05440 A01 - View
Beta vulgaris EL10Ac2g03972 PTHR10682:SF22 - NUCLEAR POLY(A) POLYMERASE Chr2_EL10_PGA_scaffold6 + View
Capsicum annuum CAN.G20.13 PGAv.1.6.scaffold20 + View
Cicer arietinum L. Ca_23267_v3 Ca_LG7_v3 - View
Cicer arietinum L. Ca_15568_v3 Ca_LG5_v3 + View
Corylus avellana Haze_21924 Similar to PAPS2: Nuclear poly(A) polymerase 2 (Arabidopsis thaliana OX%3D3702) 3 - View
Corylus avellana Haze_15855 Similar to PAPS4: Nuclear poly(A) polymerase 4 (Arabidopsis thaliana OX%3D3702) 11 - View
Coffea canephora Cc04_g02490 Putative Poly(A) polymerase beta chr4 + View
Citrus clementina Ciclev10025039m.g scaffold_7 + View
Citrus clementina Ciclev10007557m.g scaffold_1 - View
Carpinus fangiana Cfa003639 Cfa01 + View
Cardamine hirsuta CARHR115380 Poly(A) polymerase 2 Chr4 + View
Carya illinoinensis CiPaw.01G230900 PTHR10682//PTHR10682:SF24 - POLY A POLYMERASE // SUBFAMILY NOT NAMED Chr01 + View
Carya illinoinensis CiPaw.07G202000 PTHR10682:SF22 - NUCLEAR POLY(A) POLYMERASE Chr07 + View
Carya illinoinensis CiPaw.08G027300 PTHR10682//PTHR10682:SF22 - POLY A POLYMERASE // NUCLEAR POLY(A) POLYMERASE Chr08 - View
Citrullus lanatus ClCG08G012080 Poly(A) polymerase CG_Chr08 + View
Citrullus lanatus ClCG09G000240 Poly(A) polymerase CG_Chr09 - View
Cucumis melo MELO3C011126.2 Poly(A) polymerase chr03 - View
Corchorus olitorius COL.COLO4_21002 hypothetical protein AWUE01017546.1 - View
Chenopodium quinoa AUR62031935 PAPS2: Nuclear poly(A) polymerase 2 C_Quinoa_Scaffold_1810 - View
Chenopodium quinoa AUR62022222 PAPS2: Nuclear poly(A) polymerase 2 C_Quinoa_Scaffold_4319 - View
Chenopodium quinoa AUR62009223 PAPS4: Nuclear poly(A) polymerase 4 C_Quinoa_Scaffold_3674 + View
Chenopodium quinoa AUR62040222 PAPS4: Nuclear poly(A) polymerase 4 C_Quinoa_Scaffold_2344 + View
Capsella rubella Carub.0004s0568 PTHR10682:SF22 - NUCLEAR POLY(A) POLYMERASE scaffold_4 - View
Cucumis sativus L. CsaV3_2G030670 nuclear poly(a) polymerase chr2 + View
Cucumis sativus L. CsaV3_7G035250 Nuclear poly(A) polymerase chr7 + View
Daucus carota DCAR_007587 hypothetical protein DCARv2_Chr2 - View
Davidia involucrata Dinv27934 GWHABJS00000003 + View
Davidia involucrata Dinv37971 GWHABJS00000006 - View
Durio zibethinus Duzib168G0685 NW_019168159.1 - View
Durio zibethinus Duzib187G1119 NW_019167860.1 + View
Erigeron canadensis ECA240G3595 Conyza_canadensis_scaffold:5 - View
Eutrema salsugineum Thhalv10001908m.g K14376 - poly(A) polymerase (PAP) scaffold_12 - View
Fragaria x ananassa FAN27G1756 PTHR10682:SF22 - NUCLEAR POLY(A) POLYMERASE Fvb2-1 + View
Fragaria x ananassa FAN20G1860 PTHR10682:SF22 - NUCLEAR POLY(A) POLYMERASE Fvb2-3 - View
Fragaria x ananassa FAN05G3873 PTHR10682//PTHR10682:SF24 - POLY A POLYMERASE // SUBFAMILY NOT NAMED Fvb6-3 + View
Fragaria x ananassa FAN02G3570 PTHR10682//PTHR10682:SF24 - POLY A POLYMERASE // SUBFAMILY NOT NAMED Fvb6-4 - View
Fragaria x ananassa FAN15G1396 PTHR10682//PTHR10682:SF22 - POLY A POLYMERASE // NUCLEAR POLY(A) POLYMERASE Fvb2-4 + View
Fragaria x ananassa FAN14G3312 PTHR10682//PTHR10682:SF24 - POLY A POLYMERASE // SUBFAMILY NOT NAMED Fvb6-1 + View
Fragaria vesca FvH4_6g32471 PTHR10682//PTHR10682:SF24 - POLY A POLYMERASE // SUBFAMILY NOT NAMED Fvb6 - View
Fragaria vesca FvH4_2g35240 PTHR10682//PTHR10682:SF22 - POLY A POLYMERASE // NUCLEAR POLY(A) POLYMERASE Fvb2 + View
Gossypium hirsutum Gohir.D07G024600 PF04926//PF04928 - Poly(A) polymerase predicted RNA binding domain (PAP_RNA-bind) // Poly(A) polymerase central domain (PAP_central) D07 + View
Gossypium hirsutum Gohir.A07G022233 PTHR10682:SF22 - NUCLEAR POLY(A) POLYMERASE A07 + View
Gossypium hirsutum Gohir.A05G045100 PTHR10682:SF22 - NUCLEAR POLY(A) POLYMERASE A05 + View
Gossypium hirsutum Gohir.D06G090600 PTHR10682:SF22 - NUCLEAR POLY(A) POLYMERASE D06 + View
Gossypium hirsutum Gohir.D05G046800 PTHR10682:SF22 - NUCLEAR POLY(A) POLYMERASE D05 + View
Gossypium hirsutum Gohir.A06G091300 KOG2245 - Poly(A) polymerase and related nucleotidyltransferases A06 + View
Glycine max Glyma.07G015000 PTHR10682//PTHR10682:SF24 - POLY A POLYMERASE // SUBFAMILY NOT NAMED Gm07 + View
Glycine max Glyma.06G088500 PTHR10682:SF22 - NUCLEAR POLY(A) POLYMERASE Gm06 - View
Glycine max Glyma.04G086800 PTHR10682:SF22 - NUCLEAR POLY(A) POLYMERASE Gm04 - View
Gossypium raimondii Gorai.010G104200 Chr10 + View
Gossypium raimondii Gorai.009G048100 Chr09 + View
Gossypium raimondii Gorai.001G025700 Chr01 + View
Hydrangea macrophylla Hma1.2p1_0430F.1_g151330 Hma1.2p1_0430F.1 + View
Lupinus albus Lalb_Chr23g0269731 PTHR10682//PTHR10682:SF22 - POLY A POLYMERASE // NUCLEAR POLY(A) POLYMERASE Lalb_Chr23 - View
Lupinus albus Lalb_Chr25g0280191 PTHR10682//PTHR10682:SF24 - POLY A POLYMERASE // SUBFAMILY NOT NAMED Lalb_Chr25 - View
Lupinus albus Lalb_Chr08g0242901 PTHR10682:SF22 - NUCLEAR POLY(A) POLYMERASE Lalb_Chr08 + View
Lotus japonicus Lj1g0014753 PTHR10682//PTHR10682:SF22 - POLY A POLYMERASE // NUCLEAR POLY(A) POLYMERASE chr1 + View
Lactuca sativa Lsat_1_v5_gn_1_36841 K14376 - poly(A) polymerase (PAP) Lsat_1_v8_lg_1 - View
Malus domestica MD09G1202000 nuclear poly(a) polymerase Chr09 + View
Malus domestica MD08G1110400 nuclear poly(a) polymerase Chr08 + View
Manihot esculenta Manes.11G032900 Chromosome11 + View
Medicago truncatula Medtr3g110375 poly(A) polymerase-like protein chr3 - View
Medicago truncatula Medtr8g014560 poly(A) polymerase chr8 - View
Nelumbo nucifera Nn8g39051 chr8 + View
Nelumbo nucifera Nn6g35338 chr6 - View
Nicotiana tabacum Nitab4.5_0000318g0150 Nucleotidyl transferase domain, Poly(A) polymerase, RNA-binding domain, Nucleotidyltransferase, class I, C-terminal-like, Poly(A) polymerase, central domain Nitab4.5_0000318 + View
Oryza sativa ssp. japonica Os02g0227400 Poly(A) polymerase, RNA-binding region domain containing protein. chr02 + View
Petunia axillaris Peaxi162Scf00699g00521 poly(A) polymerase 2 Peaxi162Scf00699 - View
Prunus persica Prupe.3G057600 Pp03 + View
Prunus persica Prupe.1G444600 PTHR10682:SF22 - NUCLEAR POLY(A) POLYMERASE Pp01 + View
Populus trichocarpa Potri.018G057200 K14376 - poly(A) polymerase (PAP) Chr18 - View
Populus trichocarpa Potri.006G235400 PTHR10682:SF22 - NUCLEAR POLY(A) POLYMERASE Chr06 + View
Phaseolus vulgaris Phvul.009G112300 Chr09 - View
Quercus lobata QL12p040925 12 + View
Quercus lobata QL05p019739 5 + View
Rosa chinensis RcHm_v2.0_Chr6g0306691 RcHm_v2.0_Chr6 - View
Rhododendron simsii Rhsim11G0049600 chr11 + View
Rhododendron simsii Rhsim12G0203400 chr12 - View
Salix brachista Sabra06G0183700 GWHAAZH00000006 + View
Simmondsia chinensis Sc23g0005430 GWHAASQ00000023 - View
Sechium edule Sed0002516 LG03 + View
Sechium edule Sed0026372 LG01 + View
Solanum lycopersicum Solyc08g066200.3 Nuclear poly(A) polymerase 4 (AHRD V3.3 *** A0A2G3BS01_CAPCH) SL4.0ch08 + View
Solanum lycopersicum Solyc12g095890.2 Nuclear poly(A) polymerase 4 (AHRD V3.3 *** A0A2G2VI04_CAPBA) SL4.0ch12 + View
Solanum pennellii Sopen12g031790 Encodes a nuclear poly(A) polymerase. Located in the nucleus. | nuclear poly(a) polymerase (nPAP) | CONTAINS InterPro DOMAIN/s: Poly(A) polymerase , Nucleotidyltransferase, class I, C-terminal-like , Poly(A) polymerase, central domain , Nucleotidyl transferase domain , Poly(A) polymerase, RNA-binding domain Spenn-ch12 + View
Solanum pennellii Sopen08g019880 Encodes a nuclear poly(A) polymerase. Located in the nucleus. | nuclear poly(a) polymerase (nPAP) | CONTAINS InterPro DOMAIN/s: Poly(A) polymerase , Nucleotidyltransferase, class I, C-terminal-like , Poly(A) polymerase, central domain , Nucleotidyl transferase domain , Poly(A) polymerase, RNA-binding domain Spenn-ch08 + View
Selenicereus undatus Hund19493 Scaffold_33673 + View
Selenicereus undatus Hund00700 Scaffold_33678 - View
Trochodendron aralioides TAR383G0944 group10 + View
Trochodendron aralioides TAR624G1232 group9 + View
Theobroma cacao Thecc.09G048200 Poly(A) polymerase 1 Chromosome_9 - View
Theobroma cacao Thecc.06G100800 Nucleic acid binding protein Chromosome_6 - View
Tarenaya hassleriana THA.LOC104803745 nuclear poly(A) polymerase 4 isoform X1 NW_010971389.1 + View
Trifolium pratense TPR.G12503 Tp57577_TGAC_v2_LG7 + View
Tripterygium wilfordii TWI34G0264 NC_052235.1 - View
Utricularia gibba unitig_32.g11587 unitig_32 + View
Vaccinium macrocarpon vmacro17010 Similar to PAPS4: Nuclear poly(A) polymerase 4 (Arabidopsis thaliana OX%3D3702) chr4_Vaccinium_macrocarpon_Stevens_v1 + View
Vaccinium macrocarpon vmacro00183 Similar to PAPS4: Nuclear poly(A) polymerase 4 (Arabidopsis thaliana OX%3D3702) chr1_Vaccinium_macrocarpon_Stevens_v1 + View
Vigna mungo VMungo1309G1610 CM024072.1 + View
Vigna mungo VMungo0331G0180 CM024078.1 - View
Vanilla planifolia HPP92_006384 Poly(A) polymerase *** CM028151.1 - View
Vitis vinifera GSVIVG01016969001 chr9 + View
Vitis vinifera GSVIVG01015292001 chr11 + View