Paralogs (intra-species colinear regions)

No paralogous anchorpoints available

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG1G27120 LG-1 + View
Acer truncatum Atru.chr9.1506 chr9 - View
Acer truncatum Atru.chr5.366 chr5 + View
Arabidopsis lyrata AL6G46600 scaffold_6 + View
Arabidopsis lyrata AL4G44820 scaffold_4 + View
Arabidopsis lyrata AL5G43360 scaffold_5 - View
Avicennia marina MSTRG.4879 ScioBoG_102838_HRSCAF_103081 - View
Avicennia marina MSTRG.20778 ScioBoG_26180_HRSCAF_26306 + View
Amaranthus hybridus Ah.12g057810 Agamous-like MADS-box protein AGL19 AmaHy_arrow1_Scaffold_12 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.P3T58Z PTHR11945//PTHR11945:SF222 - MADS BOX PROTEIN // SUBFAMILY NOT NAMED arahy.Tifrunner.gnm1.Arahy.04 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.679QY2 PTHR11945//PTHR11945:SF222 - MADS BOX PROTEIN // SUBFAMILY NOT NAMED arahy.Tifrunner.gnm1.Arahy.14 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.XBYN1J PTHR11945:SF146 - AGAMOUS-LIKE MADS-BOX PROTEIN AGL13-RELATED arahy.Tifrunner.gnm1.Arahy.12 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.6TKF7G PTHR11945:SF146 - AGAMOUS-LIKE MADS-BOX PROTEIN AGL13-RELATED arahy.Tifrunner.gnm1.Arahy.02 + View
Arabidopsis thaliana AT4G11880 AGAMOUS-like 14 AGL12%2C AGL14%2C and AGL17 are all preferentially expressed in root tissues and therefore represent the only characterized MADS box genes expressed in roots. AGAMOUS-like 14 (AGL14)%3B FUNCTIONS IN: DNA binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: regulation of transcription%2C DNA-dependent%3B LOCATED IN: nucleus%3B EXPRESSED IN: root%3B CONTAINS InterPro DOMAIN/s: Transcription factor%2C MADS-box (InterPro:IPR002100)%2C Transcription factor%2C K-box (InterPro:IPR002487)%3B BEST Arabidopsis thaliana protein match is: AGAMOUS-like 19 (TAIR:AT4G22950.1)%3B Has 7256 Blast hits to 7253 proteins in 915 species: Archae - 0%3B Bacteria - 4%3B Metazoa - 632%3B Fungi - 309%3B Plants - 6224%3B Viruses - 0%3B Other Eukaryotes - 87 (source: NCBI BLink). Chr4 + View
Arabidopsis thaliana AT2G45650 AGAMOUS-like 6 Sequence suggests this encodes a MADS-box transcription factor. Negatively regulates the FLC/MAF clade genes and positively regulates FT in Arabidopsis. AGAMOUS-like 6 (AGL6)%3B FUNCTIONS IN: DNA binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: vegetative to reproductive phase transition of meristem%2C floral organ development%3B LOCATED IN: nucleus%3B EXPRESSED IN: 8 plant structures%3B EXPRESSED DURING: C globular stage%2C F mature embryo stage%2C petal differentiation and expansion stage%2C E expanded cotyledon stage%3B CONTAINS InterPro DOMAIN/s: Transcription factor%2C MADS-box (InterPro:IPR002100)%2C Transcription factor%2C K-box (InterPro:IPR002487)%3B BEST Arabidopsis thaliana protein match is: AGAMOUS-like 13 (TAIR:AT3G61120.1)%3B Has 7294 Blast hits to 7293 proteins in 914 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 630%3B Fungi - 307%3B Plants - 6281%3B Viruses - 0%3B Other Eukaryotes - 76 (source: NCBI BLink). Chr2 + View
Brassica carinata BcaC02g07078 ChrC02 + View
Brassica carinata BcaC02g10204 ChrC02 - View
Brassica napus A05p05610 A05 + View
Brassica napus C04p06560 C04 + View
Brassica oleracea BolC4t22281H C4 - View
Brassica oleracea BolC1t01688H C1 - View
Brassica rapa BraA05t19534Z A05 + View
Beta vulgaris EL10Ac1g00949 PTHR11945:SF146 - AGAMOUS-LIKE MADS-BOX PROTEIN AGL13-RELATED Chr1_EL10_PGA_scaffold3 + View
Cannabis sativa CANSAT56G0334 NC_044371.1 + View
Cicer arietinum L. Ca_07844_v3 Ca_LG3_v3 + View
Citrus clementina Ciclev10022936m.g scaffold_3 - View
Citrus clementina Ciclev10006217m.g scaffold_9 - View
Cardamine hirsuta CARHR140870 MADS-box transcription factor Chr4 + View
Carya illinoinensis CiPaw.12G100300 PTHR11945:SF208 - MADS-BOX PROTEIN SOC1 Chr12 + View
Carya illinoinensis CiPaw.02G164800 PTHR11945//PTHR11945:SF222 - MADS BOX PROTEIN // SUBFAMILY NOT NAMED Chr02 + View
Carya illinoinensis CiPaw.11G142800 PTHR11945//PTHR11945:SF191 - MADS BOX PROTEIN // AGAMOUS-LIKE MADS-BOX PROTEIN AGL14-RELATED Chr11 + View
Carya illinoinensis CiPaw.04G069000 PTHR11945:SF208 - MADS-BOX PROTEIN SOC1 Chr04 + View
Citrullus lanatus ClCG06G000220 MADS-box transcription factor CG_Chr06 + View
Citrullus lanatus ClCG01G003280 MADS box transcription factor CG_Chr01 + View
Cucumis melo MELO3C022515.2 MADS-box protein SOC1-like chr11 + View
Carica papaya Cpa.g.sc18.166 supercontig_18 - View
Chenopodium quinoa AUR62004272 AGL6: Agamous-like MADS-box protein AGL6 C_Quinoa_Scaffold_4250 + View
Capsella rubella Carub.0004s2830 PTHR11945:SF146 - AGAMOUS-LIKE MADS-BOX PROTEIN AGL13-RELATED scaffold_4 + View
Cucumis sativus L. CsaV3_6G006010 MADS-box transcription factor chr6 + View
Cucumis sativus L. CsaV3_3G009400 MADS-box protein chr3 + View
Cucumis sativus L. CsaV3_5G003360 MADS-box protein chr5 + View
Daucus carota DCAR_006890 hypothetical protein DCARv2_Chr2 - View
Davidia involucrata Dinv43739 GWHABJS00000016 + View
Davidia involucrata Dinv35141 GWHABJS00000009 + View
Davidia involucrata Dinv39034 GWHABJS00000003 + View
Davidia involucrata Dinv37704 GWHABJS00000017 + View
Durio zibethinus Duzib084G0383 NW_019167827.1 - View
Durio zibethinus Duzib133G1353 NW_019167938.1 + View
Durio zibethinus Duzib138G0083 NW_019167893.1 + View
Erigeron canadensis ECA236G5033 Conyza_canadensis_scaffold:3 - View
Erigeron canadensis ECA234G2023 Conyza_canadensis_scaffold:4 - View
Eucalyptus grandis Eucgr.D01939 Chr04 + View
Eucalyptus grandis Eucgr.E01330 Chr05 - View
Erythranthe guttata Migut.B01667 scaffold_2 + View
Eutrema salsugineum Thhalv10001597m.g PTHR11945:SF146 - AGAMOUS-LIKE MADS-BOX PROTEIN AGL13-RELATED scaffold_22 + View
Eutrema salsugineum Thhalv10006419m.g PTHR11945:SF146 - AGAMOUS-LIKE MADS-BOX PROTEIN AGL13-RELATED scaffold_19 + View
Fragaria x ananassa FAN10G2365 PTHR11945//PTHR11945:SF146 - MADS BOX PROTEIN // AGAMOUS-LIKE MADS-BOX PROTEIN AGL13-RELATED Fvb7-1 + View
Fragaria x ananassa FAN10G2359 PTHR11945:SF146 - AGAMOUS-LIKE MADS-BOX PROTEIN AGL13-RELATED Fvb7-1 + View
Fragaria x ananassa FAN03G2293 PTHR11945//PTHR11945:SF208 - MADS BOX PROTEIN // MADS-BOX PROTEIN SOC1 Fvb7-3 + View
Fragaria x ananassa FAN06G4091 PTHR11945:SF146 - AGAMOUS-LIKE MADS-BOX PROTEIN AGL13-RELATED Fvb7-2 + View
Fragaria x ananassa FAN03G0429 PTHR11945//PTHR11945:SF222 - MADS BOX PROTEIN // SUBFAMILY NOT NAMED Fvb7-3 + View
Fragaria vesca FvH4_7g12670 PTHR11945//PTHR11945:SF146 - MADS BOX PROTEIN // AGAMOUS-LIKE MADS-BOX PROTEIN AGL13-RELATED Fvb7 + View
Gossypium hirsutum Gohir.D11G087700 PTHR11945:SF146 - AGAMOUS-LIKE MADS-BOX PROTEIN AGL13-RELATED D11 + View
Gossypium hirsutum Gohir.A11G083600 PTHR11945:SF146 - AGAMOUS-LIKE MADS-BOX PROTEIN AGL13-RELATED A11 + View
Gossypium hirsutum Gohir.D12G103400 PTHR11945//PTHR11945:SF237 - MADS BOX PROTEIN // SUBFAMILY NOT NAMED D12 + View
Glycine max Glyma.18G224300 PTHR11945:SF146 - AGAMOUS-LIKE MADS-BOX PROTEIN AGL13-RELATED Gm18 + View
Glycine max Glyma.09G266200 PTHR11945//PTHR11945:SF222 - MADS BOX PROTEIN // SUBFAMILY NOT NAMED Gm09 + View
Glycine max Glyma.09G149000 PTHR11945//PTHR11945:SF165 - MADS BOX PROTEIN // SUBFAMILY NOT NAMED Gm09 - View
Gossypium raimondii Gorai.007G093700 Chr07 + View
Lotus japonicus Lj5g0014542 PTHR11945//PTHR11945:SF165 - MADS BOX PROTEIN // SUBFAMILY NOT NAMED chr5 + View
Lotus japonicus Lj2g0024634 PTHR11945//PTHR11945:SF165 - MADS BOX PROTEIN // SUBFAMILY NOT NAMED chr2 - View
Lactuca sativa Lsat_1_v5_gn_4_37340 PTHR11945//PTHR11945:SF222 - MADS BOX PROTEIN // SUBFAMILY NOT NAMED Lsat_1_v8_lg_4 + View
Lactuca sativa Lsat_1_v5_gn_3_134681 Lsat_1_v8_lg_3 + View
Malus domestica MD02G1197400 AGAMOUS-like 20 Chr02 + View
Manihot esculenta Manes.05G041900 Chromosome05 + View
Manihot esculenta Manes.01G263500 Chromosome01 + View
Medicago truncatula Medtr7g075850 MADS-box transcription factor chr7 + View
Medicago truncatula Medtr8g033220 MADS-box transcription factor chr8 + View
Punica granatum PGR031G2015 NC_045127.1 - View
Punica granatum PGR042G1101 NC_045130.1 + View
Prunus persica Prupe.5G087500 PTHR11945:SF191 - AGAMOUS-LIKE MADS-BOX PROTEIN AGL14-RELATED Pp05 - View
Prunus persica Prupe.2G151000 PTHR11945:SF146 - AGAMOUS-LIKE MADS-BOX PROTEIN AGL13-RELATED Pp02 + View
Prunus persica Prupe.2G287000 PTHR11945:SF146 - AGAMOUS-LIKE MADS-BOX PROTEIN AGL13-RELATED Pp02 + View
Populus trichocarpa Potri.002G151700 PTHR11945//PTHR11945:SF222 - MADS BOX PROTEIN // SUBFAMILY NOT NAMED Chr02 - View
Populus trichocarpa Potri.014G074100 PTHR11945:SF146 - AGAMOUS-LIKE MADS-BOX PROTEIN AGL13-RELATED Chr14 + View
Populus trichocarpa Potri.003G119700 PTHR11945:SF191 - AGAMOUS-LIKE MADS-BOX PROTEIN AGL14-RELATED Chr03 - View
Phaseolus vulgaris Phvul.004G123500 PTHR11945//PTHR11945:SF165 - MADS BOX PROTEIN // SUBFAMILY NOT NAMED Chr04 - View
Quercus lobata QL08p051133 8 + View
Rosa chinensis RcHm_v2.0_Chr1g0351671 RcHm_v2.0_Chr1 + View
Rhododendron simsii Rhsim01G0160500 chr01 + View
Rhododendron simsii Rhsim07G0023100 chr07 + View
Striga asiatica SGA_v2.0_scaffold153G37049 scaffold153 + View
Striga asiatica SGA_v2.0_scaffold95G28880 scaffold95 + View
Striga asiatica SGA_v2.0_scaffold11G05622 scaffold11 + View
Salvia bowleyana SalBow5G5167 GWHASIU00000003 + View
Salix brachista Sabra02G0119900 GWHAAZH00000002 - View
Salix brachista Sabra14G0052900 GWHAAZH00000014 - View
Salix brachista Sabra12G0045100 GWHAAZH00000012 + View
Salix brachista Sabra01G0085900 GWHAAZH00000001 + View
Sechium edule Sed0009092 LG09 + View
Sechium edule Sed0021213 LG04 - View
Sechium edule Sed0009751 LG02 + View
Schrenkiella parvula Sp5g02260 PTHR11945//PTHR11945:SF146 - MADS BOX PROTEIN // AGAMOUS-LIKE MADS-BOX PROTEIN AGL13-RELATED ch5-1 + View
Schrenkiella parvula Sp4g27690 PTHR11945//PTHR11945:SF146 - MADS BOX PROTEIN // AGAMOUS-LIKE MADS-BOX PROTEIN AGL13-RELATED ch4-6 + View
Selenicereus undatus Hund27334 Scaffold_2055 + View
Trochodendron aralioides TAR636G2894 group1 + View
Theobroma cacao Thecc.03G166600 AGAMOUS-like 6 Chromosome_3 + View
Theobroma cacao Thecc.01G371300 AGAMOUS-like 20 Chromosome_1 + View
Tarenaya hassleriana THA.LOC104817266 MADS-box protein SOC1-like isoform X1 NW_010965946.1 - View
Tarenaya hassleriana THA.LOC104802004 agamous-like MADS-box protein AGL6 isoform X1 NW_010970490.1 + View
Vaccinium macrocarpon vmacro20984 Similar to MADS50: MADS-box transcription factor 50 (Oryza sativa subsp. japonica OX%3D39947) chr10_Vaccinium_macrocarpon_Stevens_v1 - View
Vitis vinifera GSVIVG01027579001 chr15 + View
Vitis vinifera GSVIVG01018450001 chr16 + View