Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CSS0014211 PREDICTED: probable E3 ubiquitin-protein ligase HIP1 [Vitis vinifera] Chr10 + View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Acer truncatum Atru.chr5.2655 chr5 + View
Arabidopsis lyrata AL3G47260 scaffold_3 + View
Avicennia marina MSTRG.27732 ScioBoG_94932_HRSCAF_95134 - View
Avicennia marina MSTRG.20166 ScioBoG_26180_HRSCAF_26306 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.U8FDA3 PF13639 - Ring finger domain (zf-RING_2) arahy.Tifrunner.gnm1.Arahy.05 + View
Arabidopsis thaliana AT2G15530 RING/U-box superfamily protein RING/U-box superfamily protein%3B FUNCTIONS IN: zinc ion binding%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C RING-type (InterPro:IPR001841)%2C Zinc finger%2C C3HC4 RING-type (InterPro:IPR018957)%3B BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT4G34040.1)%3B Has 9020 Blast hits to 8257 proteins in 301 species: Archae - 0%3B Bacteria - 55%3B Metazoa - 2556%3B Fungi - 687%3B Plants - 3907%3B Viruses - 28%3B Other Eukaryotes - 1787 (source: NCBI BLink). RING/U-box superfamily protein%3B FUNCTIONS IN: zinc ion binding%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C RING-type (InterPro:IPR001841)%2C Zinc finger%2C C3HC4 RING-type (InterPro:IPR018957)%3B BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT4G34040.1). Chr2 + View
Brassica carinata BcaB03g16301 ChrB03 + View
Brassica napus C07p08340 C07 - View
Cannabis sativa CANSAT25G2748 NC_044370.1 - View
Cicer arietinum L. Ca_18706_v3 Ca_LG6_v3 - View
Corylus avellana Haze_17513 Similar to BBR: E3 ubiquitin ligase BIG BROTHER-related (Arabidopsis thaliana OX%3D3702) 7 - View
Coffea canephora Cc02_g18950 Putative RING/U-box superfamily protein chr2 - View
Citrus clementina Ciclev10011412m.g scaffold_6 + View
Citrus clementina Ciclev10027894m.g scaffold_8 + View
Cardamine hirsuta CARHR105820 RING/U-box superfamily protein Chr3 + View
Carya illinoinensis CiPaw.01G016400 PTHR22937//PTHR22937:SF55 - RING FINGER CONTAINING PROTEIN // SUBFAMILY NOT NAMED Chr01 + View
Carya illinoinensis CiPaw.06G171600 PTHR14155//PTHR14155:SF72 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED Chr06 + View
Carya illinoinensis CiPaw.02G007700 PTHR22937//PTHR22937:SF55 - RING FINGER CONTAINING PROTEIN // SUBFAMILY NOT NAMED Chr02 + View
Capsella rubella Carub.0007s0636 PTHR14155//PTHR14155:SF72 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED scaffold_7 + View
Daucus carota DCAR_029072 hypothetical protein DCARv2_Chr9 - View
Daucus carota DCAR_022013 hypothetical protein DCARv2_Chr6 - View
Davidia involucrata Dinv42168 GWHABJS00000002 + View
Davidia involucrata Dinv15731 GWHABJS00000005 - View
Durio zibethinus Duzib187G1450 NW_019167860.1 + View
Durio zibethinus Duzib132G0227 The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 3 bases in 3 codons NW_019167915.1 - View
Durio zibethinus Duzib116G0443 NW_019167949.1 - View
Durio zibethinus Duzib248G1643 NW_019168048.1 + View
Erigeron canadensis ECA234G0549 Conyza_canadensis_scaffold:4 + View
Eucalyptus grandis Eucgr.K03219 Chr11 - View
Eucalyptus grandis Eucgr.I01135 Chr09 + View
Erythranthe guttata Migut.B00363 scaffold_2 - View
Eutrema salsugineum Thhalv10022580m.g PTHR14155//PTHR14155:SF72 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED scaffold_11 - View
Fragaria x ananassa FAN24G2043 PTHR14155//PTHR14155:SF72 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED Fvb2-2 - View
Fragaria x ananassa FAN02G4435 PTHR22937//PTHR22937:SF47 - RING FINGER CONTAINING PROTEIN // RING-FINGER DOMAIN-CONTAINING PROTEIN Fvb6-4 - View
Fragaria x ananassa FAN15G3694 PTHR14155//PTHR14155:SF72 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED Fvb2-4 + View
Fragaria x ananassa FAN20G1867 PTHR14155//PTHR14155:SF72 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED Fvb2-3 - View
Fragaria x ananassa FAN05G1888 PTHR22937//PTHR22937:SF47 - RING FINGER CONTAINING PROTEIN // RING-FINGER DOMAIN-CONTAINING PROTEIN Fvb6-3 + View
Gossypium hirsutum Gohir.D13G040300 K10635 - E3 ubiquitin-protein ligase Arkadia [EC:6.3.2.19] (RNF111) D13 - View
Gossypium hirsutum Gohir.A04G120400 PTHR14155//PTHR14155:SF72 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED A04 + View
Gossypium hirsutum Gohir.D12G023700 PTHR14155//PTHR14155:SF72 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED D12 + View
Gossypium hirsutum Gohir.D04G161900 PTHR14155//PTHR14155:SF72 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED D04 + View
Gossypium hirsutum Gohir.A12G023000 PTHR14155//PTHR14155:SF72 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED A12 + View
Gossypium hirsutum Gohir.A13G041600 K10635 - E3 ubiquitin-protein ligase Arkadia [EC:6.3.2.19] (RNF111) A13 - View
Glycine max Glyma.17G172100 PTHR14155//PTHR14155:SF163 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED Gm17 + View
Glycine max Glyma.07G214600 PTHR22937//PTHR22937:SF55 - RING FINGER CONTAINING PROTEIN // SUBFAMILY NOT NAMED Gm07 - View
Glycine max Glyma.02G103300 PTHR14155//PTHR14155:SF72 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED Gm02 - View
Gossypium raimondii Gorai.008G024100 Chr08 + View
Gossypium raimondii Gorai.012G149900 Chr12 + View
Gossypium raimondii Gorai.013G045200 Chr13 - View
Gossypium raimondii Gorai.007G214900 Chr07 - View
Hydrangea macrophylla Hma1.2p1_0370F.1_g137640 Hma1.2p1_0370F.1 + View
Lupinus albus Lalb_Chr09g0328401 PTHR14155//PTHR14155:SF72 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED Lalb_Chr09 - View
Lotus japonicus Lj4g0022544 K19041 - E3 ubiquitin-protein ligase RNF38/44 [EC:6.3.2.19] (RNF38_44) chr4 + View
Lonicera japonica Lj9C355G13 GWHAAZE00000009 + View
Lactuca sativa Lsat_1_v5_gn_5_112240 K10635 - E3 ubiquitin-protein ligase Arkadia [EC:6.3.2.19] (RNF111) Lsat_1_v8_lg_5 + View
Lactuca sativa Lsat_1_v5_gn_0_4280 PTHR22937//PTHR22937:SF55 - RING FINGER CONTAINING PROTEIN // SUBFAMILY NOT NAMED Lsat_1_v8_lg_7 + View
Malus domestica MD05G1083400 RING/U-box superfamily protein Chr05 - View
Malus domestica MD04G1100800 RING/U-box superfamily protein Chr04 + View
Manihot esculenta Manes.13G122800 Chromosome13 + View
Medicago truncatula Medtr4g085625 hypothetical protein chr4 + View
Petunia axillaris Peaxi162Scf00016g02027 RING/U-box superfamily protein Peaxi162Scf00016 - View
Punica granatum PGR031G2886 NC_045127.1 - View
Punica granatum PGR142G3349 NC_045128.1 + View
Punica granatum PGR102G0481 NC_045129.1 + View
Prunus persica Prupe.8G127800 Pp08 - View
Pisum sativum Psat4g086320 Ring finger domain chr4LG4 + View
Papaver somniferum PSO675G7872 NC_039358.1 - View
Populus trichocarpa Potri.009G100100 PTHR14155//PTHR14155:SF72 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED Chr09 + View
Populus trichocarpa Potri.007G045500 PTHR22937//PTHR22937:SF55 - RING FINGER CONTAINING PROTEIN // SUBFAMILY NOT NAMED Chr07 - View
Populus trichocarpa Potri.005G139900 PTHR22937//PTHR22937:SF55 - RING FINGER CONTAINING PROTEIN // SUBFAMILY NOT NAMED Chr05 - View
Phaseolus vulgaris Phvul.003G242600 PTHR22937 - RING FINGER CONTAINING PROTEIN Chr03 + View
Quercus lobata QL11p034968 11 + View
Rosa chinensis RcHm_v2.0_Chr6g0257951 RcHm_v2.0_Chr6 - View
Rhododendron simsii Rhsim05G0086400 chr05 - View
Rhododendron simsii Rhsim08G0099500 chr08 + View
Striga asiatica SGA_v2.0_scaffold90G27622 scaffold90 + View
Salix brachista Sabra09G0076100 GWHAAZH00000009 + View
Salix brachista Sabra07G0040500 GWHAAZH00000007 - View
Solanum lycopersicum Solyc01g107930.3 RING/U-box superfamily protein (AHRD V3.3 *-* A0A1P8B1Z6_ARATH) SL4.0ch01 + View
Trochodendron aralioides TAR376G0642 group14 + View
Trochodendron aralioides TAR628G0833 group5 + View
Theobroma cacao Thecc.02G103000 Binding protein Chromosome_2 - View
Tarenaya hassleriana THA.LOC104804377 E3 ubiquitin-protein ligase MBR2-like NW_010971389.1 - View
Tarenaya hassleriana THA.LOC104819572 E3 ubiquitin-protein ligase MBR2-like isoform X1 NW_010966177.1 + View
Trifolium pratense TPR.G12607 Tp57577_TGAC_v2_LG2 + View
Tripterygium wilfordii TWI75G1870 NC_052253.1 - View
Tripterygium wilfordii TWI31G1329 NC_052233.1 + View
Vaccinium macrocarpon vmacro19510 Similar to MBR1: E3 ubiquitin-protein ligase MBR1 (Arabidopsis thaliana OX%3D3702) chr5_Vaccinium_macrocarpon_Stevens_v1 - View
Vigna mungo VMungo0251G2889 CM024069.1 + View
Vitis vinifera GSVIVG01031717001 chr3 + View