Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CSS0047972 PREDICTED: transcription factor PIF3-like isoform X2 [Vitis vinifera] Chr6 + View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Acer truncatum Atru.chr5.850 chr5 - View
Acer truncatum Atru.chr12.1522 chr12 - View
Actinidia chinensis Actinidia17735 Lachesis_group12 - View
Actinidia chinensis Actinidia22852 Lachesis_group26 - View
Actinidia chinensis Actinidia11692 Lachesis_group25 - View
Avicennia marina MSTRG.16434 ScioBoG_19743_HRSCAF_19834 + View
Amaranthus hybridus Ah.06g190790 Transcription factor PIF3 (Basic helix-loop-helix protein 8) (AtbHLH8) (bHLH 8) (Phytochrome-associated protein 3) (Phytochrome-interacting factor 3) (Transcription factor EN 100) (bHLH transcription factor bHLH008) AmaHy_arrow1_Scaffold_6 + View
Aquilegia oxysepala Aqoxy2G02438 CHR02 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.IC82WL K12126 - phytochrome-interacting factor 3 (PIF3) arahy.Tifrunner.gnm1.Arahy.09 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.ILFA61 K12126 - phytochrome-interacting factor 3 (PIF3) arahy.Tifrunner.gnm1.Arahy.19 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.SDDU5A KOG4304 - Transcriptional repressors of the hairy/E(spl) family (contains HLH) arahy.Tifrunner.gnm1.Arahy.06 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.QKV9FM K12126 - phytochrome-interacting factor 3 (PIF3) arahy.Tifrunner.gnm1.Arahy.16 + View
Amborella trichopoda ATR0796G291 AmTr_v1.0_scaffold00045 + View
Beta vulgaris EL10Ac4g09570 K12126 - phytochrome-interacting factor 3 (PIF3) Chr4_EL10_PGA_scaffold1 + View
Capsicum annuum CAN.G1248.10 PGAv.1.6.scaffold1248 - View
Cicer arietinum L. Ca_09250_v3 Ca_LG3_v3 + View
Cicer arietinum L. Ca_10208_v3 Ca_LG4_v3 + View
Corylus avellana Haze_05157 Similar to PIL15: Transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15 (Oryza sativa subsp. japonica OX%3D39947) 2 + View
Corylus avellana Haze_15014 Similar to PIF3: Transcription factor PIF3 (Arabidopsis thaliana OX%3D3702) 11 - View
Coffea canephora Cc02_g35910 Putative Transcription factor PIF3 chr2 + View
Citrus clementina Ciclev10027890m.g scaffold_8 - View
Citrus clementina Ciclev10019786m.g scaffold_3 + View
Ceratophyllum demersum CDE09G1436 7 - View
Carya illinoinensis CiPaw.01G001200 K12126 - phytochrome-interacting factor 3 (PIF3) Chr01 - View
Carya illinoinensis CiPaw.08G081900 PTHR12565//PTHR12565:SF178 - STEROL REGULATORY ELEMENT-BINDING PROTEIN // TRANSCRIPTION FACTOR PIF3 Chr08 + View
Carya illinoinensis CiPaw.07G126500 K12126 - phytochrome-interacting factor 3 (PIF3) Chr07 + View
Citrullus lanatus ClCG02G014630 Transcription factor PIF3 CG_Chr02 - View
Cucumis melo MELO3C031303.2 transcription factor PIF3 isoform X1 chr05 - View
Corchorus olitorius COL.COLO4_05481 hypothetical protein AWUE01012362.1 + View
Chenopodium quinoa AUR62006825 PIF3: Transcription factor PIF3 C_Quinoa_Scaffold_3429 + View
Chenopodium quinoa AUR62000483 PIF3: Transcription factor PIF3 C_Quinoa_Scaffold_2088 + View
Cucumis sativus L. CsaV3_2G007370 transcription factor PIF3 isoform X1 chr2 + View
Davidia involucrata Dinv24521 GWHABJS00000005 - View
Davidia involucrata Dinv30953 GWHABJS00000002 + View
Durio zibethinus Duzib128G1257 NW_019168481.1 - View
Eucalyptus grandis Eucgr.B01825 Chr02 - View
Eucalyptus grandis Eucgr.H01336 Chr08 - View
Erythranthe guttata Migut.B00888 scaffold_2 + View
Fragaria x ananassa FAN05G0854 K12126 - phytochrome-interacting factor 3 (PIF3) Fvb6-3 - View
Fragaria x ananassa FAN09G4740 K12126 - phytochrome-interacting factor 3 (PIF3) Fvb6-2 - View
Fragaria x ananassa FAN02G1668 K12126 - phytochrome-interacting factor 3 (PIF3) Fvb6-4 + View
Fragaria x ananassa FAN14G2970 K12126 - phytochrome-interacting factor 3 (PIF3) Fvb6-1 - View
Fragaria vesca FvH4_6g08610 K12126 - phytochrome-interacting factor 3 (PIF3) Fvb6 + View
Gossypium hirsutum Gohir.A11G105500 K12126 - phytochrome-interacting factor 3 (PIF3) A11 + View
Gossypium hirsutum Gohir.D11G110400 K12126 - phytochrome-interacting factor 3 (PIF3) D11 + View
Glycine max Glyma.20G091200 K12126 - phytochrome-interacting factor 3 (PIF3) Gm20 - View
Glycine max Glyma.03G225000 K12126 - phytochrome-interacting factor 3 (PIF3) Gm03 + View
Glycine max Glyma.10G138800 K12126 - phytochrome-interacting factor 3 (PIF3) Gm10 + View
Glycine max Glyma.19G222000 K12126 - phytochrome-interacting factor 3 (PIF3) Gm19 + View
Glycine max Glyma.10G142600 K12126 - phytochrome-interacting factor 3 (PIF3) Gm10 - View
Gossypium raimondii Gorai.007G118100 Chr07 + View
Hydrangea macrophylla Hma1.2p1_0759F.1_g213840 Hma1.2p1_0759F.1 - View
Lotus japonicus Lj5g0002964 K12126 - phytochrome-interacting factor 3 (PIF3) chr5 - View
Lotus japonicus Lj1g0013455 K12126 - phytochrome-interacting factor 3 (PIF3) chr1 + View
Lonicera japonica Lj5A317T23 GWHAAZE00000005 - View
Lonicera japonica Lj9P237T14 GWHAAZE00000009 + View
Magnolia biondii MBI19_g04827_MAGBIO AED:0.15 Chr19 - View
Magnolia biondii MBI18_g03843_MAGBIO AED:0.08 Chr18 - View
Malus domestica MD04G1185100 phytochrome interacting factor 3 Chr04 - View
Malus domestica MD12G1198900 phytochrome interacting factor 3 Chr12 - View
Manihot esculenta Manes.09G181800 Chromosome09 + View
Manihot esculenta Manes.05G008000 Chromosome05 + View
Manihot esculenta Manes.08G107100 Chromosome08 - View
Medicago truncatula Medtr1g084980 phytochrome-interacting factor 3.1 chr1 + View
Medicago truncatula Medtr7g111320 phytochrome-interacting factor 3.1 chr7 - View
Nelumbo nucifera Nn4g25302 chr4 + View
Nelumbo nucifera Nn3g21980 chr3 + View
Nicotiana tabacum Nitab4.5_0000081g0230 Myc-type, basic helix-loop-helix (bHLH) domain Nitab4.5_0000081 - View
Olea europaea Oeu061909.1 chr3 + View
Oryza sativa ssp. japonica Os05g0139100 Typical DNA-binding bHLH protein, Negative regulation of grain length and weight chr05 + View
Petunia axillaris Peaxi162Scf00071g00210 phytochrome interacting factor 3 Peaxi162Scf00071 - View
Petunia axillaris Peaxi162Scf00194g00213 phytochrome interacting factor 3 Peaxi162Scf00194 + View
Punica granatum PGR031G0109 NC_045127.1 - View
Punica granatum PGR083G1143 NC_045133.1 - View
Prunus persica Prupe.6G303500 PTHR12565:SF178 - TRANSCRIPTION FACTOR PIF3 Pp06 - View
Pisum sativum Psat6g155920 Helix-loop-helix DNA-binding domain chr6LG2 + View
Papaver somniferum PSO170G0649 NC_039360.1 + View
Populus trichocarpa Potri.013G001300 K12126 - phytochrome-interacting factor 3 (PIF3) Chr13 - View
Populus trichocarpa Potri.005G001800 K12126 - phytochrome-interacting factor 3 (PIF3) Chr05 - View
Populus trichocarpa Potri.014G111400 K12126 - phytochrome-interacting factor 3 (PIF3) Chr14 - View
Phaseolus vulgaris Phvul.007G206000 Chr07 + View
Phaseolus vulgaris Phvul.001G218800 K12126 - phytochrome-interacting factor 3 (PIF3) Chr01 + View
Quercus lobata QL03p011172 3 + View
Rosa chinensis RcHm_v2.0_Chr3g0458701 RcHm_v2.0_Chr3 + View
Rhododendron simsii Rhsim05G0124000 chr05 + View
Rhododendron simsii Rhsim11G0106200 chr11 + View
Salvia bowleyana SalBow5G1080 GWHASIU00000003 - View
Salix brachista Sabra13G0001100 GWHAAZH00000013 - View
Simmondsia chinensis Sc16g0009430 GWHAASQ00000016 + View
Simmondsia chinensis Sc09g0002390 GWHAASQ00000009 - View
Sechium edule Sed0011745 LG03 - View
Solanum lycopersicum Solyc01g102300.3 bHLH transcription factor 006 SL4.0ch01 + View
Schrenkiella parvula Sp1g08130 K12126 - phytochrome-interacting factor 3 (PIF3) ch1-1 + View
Solanum pennellii Sopen01g044750 Transcription factor interacting with photoreceptors phyA and phyB. Forms a ternary complex in vitro with G-box element of the promoters of LHY, CCA1. Acts as a negative regulator of phyB signalling. It degrades rapidly after irradiation of dark grown seedlings in a process controlled by phytochromes. Does not play a significant role in controlling light input and function of the circadian clockwork. Binds to G- and E-boxes, but not to other ACEs. Binds to anthocyanin biosynthetic genes in a light- and HY5-independent fashion. PIF3 function as a transcriptional activator can be functionally and mechanistically separated from its role in repression of PhyB mediated processes. | phytochrome interacting factor 3 (PIF3) | CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain , Helix-loop-helix DNA-binding | BEST Arabidopsis thaliana protein match is: phytochrome interacting factor 3-like 1 Spenn-ch01 + View
Solanum tuberosum PGSC0003DMG400018280 Helix-loop-helix DNA-binding ST4.03ch01 + View
Selenicereus undatus Hund21826 Scaffold_33680 - View
Selenicereus undatus Hund07268 Scaffold_33676 - View
Trochodendron aralioides TAR365G1241 group16 + View
Trochodendron aralioides TAR633G0207 group2 + View
Theobroma cacao Thecc.05G330400 Phytochrome interacting factor 3 Chromosome_5 + View
Trifolium pratense TPR.G8400 Tp57577_TGAC_v2_LG6 - View
Trifolium pratense TPR.G34901 Tp57577_TGAC_v2_scaf_622 - View
Trifolium pratense TPR.G1653 Tp57577_TGAC_v2_LG6 + View
Vaccinium macrocarpon vmacro19795 Similar to PIL15: Transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15 (Oryza sativa subsp. japonica OX%3D39947) chr5_Vaccinium_macrocarpon_Stevens_v1 + View
Vaccinium macrocarpon vmacro01664 Similar to PIF3: Transcription factor PIF3 (Arabidopsis thaliana OX%3D3702) chr1_Vaccinium_macrocarpon_Stevens_v1 - View
Vigna mungo VMungo0720G1779 CM024071.1 - View
Vigna mungo VMungo1383G0769 CM024070.1 + View
Vitis vinifera GSVIVG01028238001 chr7 - View
Vitis vinifera GSVIVG01031338001 chr14 - View
Zea mays Zm00001eb417610 Zm00001e040380 Putative HLH DNA-binding domain superfamily protein 10 + View