Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
A09p11810 A09 + View
A07p02420 A07 + View
A06p33300 A06 + View
A08p22180 A08 + View
C03p59080 C03 - View
C09p13910 C09 + View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG6G13350 LG-6 - View
Aethionema arabicum Aa31LG8G15720 LG-8 + View
Acer truncatum Atru.chr3.599 chr3 + View
Arabidopsis lyrata AL3G51560 scaffold_3 - View
Arabidopsis lyrata AL7G14530 scaffold_7 - View
Avicennia marina MSTRG.23514 ScioBoG_3895_HRSCAF_3912 - View
Avicennia marina MSTRG.16816 ScioBoG_19743_HRSCAF_19834 + View
Aquilegia oxysepala Aqoxy5G01601 CHR05 - View
Arabidopsis thaliana AT2G18300 basic helix-loop-helix (bHLH) DNA-binding superfamily protein basic helix-loop-helix (bHLH) DNA-binding superfamily protein%3B FUNCTIONS IN: sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: response to cytokinin stimulus%2C regulation of transcription%3B LOCATED IN: nucleus%3B EXPRESSED IN: 13 plant structures%3B EXPRESSED DURING: 8 growth stages%3B CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092)%2C Helix-loop-helix DNA-binding (InterPro:IPR011598)%3B BEST Arabidopsis thaliana protein match is: BR enhanced expression 2 (TAIR:AT4G36540.2)%3B Has 2065 Blast hits to 2057 proteins in 127 species: Archae - 0%3B Bacteria - 4%3B Metazoa - 84%3B Fungi - 45%3B Plants - 1914%3B Viruses - 0%3B Other Eukaryotes - 18 (source: NCBI BLink). basic helix-loop-helix (bHLH) DNA-binding superfamily protein%3B FUNCTIONS IN: sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: response to cytokinin stimulus%2C regulation of transcription%3B LOCATED IN: nucleus%3B EXPRESSED IN: 13 plant structures%3B EXPRESSED DURING: 8 growth stages%3B CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092)%2C Helix-loop-helix DNA-binding (InterPro:IPR011598)%3B BEST Arabidopsis thaliana protein match is: BR enhanced expression 2 (TAIR:AT4G36540.1). Chr2 - View
Arabidopsis thaliana AT4G36540 BR enhanced expression 2 Encodes the brassinosteroid signaling component BEE2 (BR-ENHANCED EXPRESSION 2). Positively modulates the shade avoidance syndrome in Arabidopsis seedlings. BR enhanced expression 2 (BEE2)%3B FUNCTIONS IN: DNA binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: regulation of transcription%3B LOCATED IN: nucleus%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092)%2C Helix-loop-helix DNA-binding (InterPro:IPR011598)%3B BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT2G18300.2)%3B Has 2056 Blast hits to 2048 proteins in 102 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 23%3B Fungi - 31%3B Plants - 2000%3B Viruses - 0%3B Other Eukaryotes - 2 (source: NCBI BLink). Chr4 + View
Amborella trichopoda ATR0568G037 AmTr_v1.0_scaffold00011 - View
Brassica carinata BcaC01g00463 ChrC01 - View
Brassica carinata BcaB03g16618 ChrB03 - View
Brassica carinata BcaC06g36399 ChrC06 - View
Brassica carinata BcaB08g34804 ChrB08 - View
Brassica oleracea BolC9t54283H C9 + View
Brassica oleracea BolC3t18169H C3 - View
Brassica oleracea BolC7t40855H C7 + View
Brassica rapa BraA07t28035Z A07 + View
Brassica rapa BraA06t26259Z A06 + View
Brassica rapa BraA09t36828Z A09 + View
Brassica rapa BraA08t34178Z A08 + View
Camellia sinensis var. sinensis CSS0018697 PREDICTED: transcription factor HBI1 [Vitis vinifera] Chr2 + View
Coffea canephora Cc02_g17440 Putative Transcription factor bHLH63 chr2 - View
Coffea canephora Cc07_g09660 Putative Transcription factor bHLH64 chr7 + View
Cardamine hirsuta CARHR244850 Transcription factor bHLH64 Chr7 + View
Cardamine hirsuta CARHR108890 BHLH transcription factor Chr3 - View
Carya illinoinensis CiPaw.06G134700 PTHR12565//PTHR12565:SF149 - STEROL REGULATORY ELEMENT-BINDING PROTEIN // SUBFAMILY NOT NAMED Chr06 - View
Carya illinoinensis CiPaw.05G065800 PTHR12565//PTHR12565:SF149 - STEROL REGULATORY ELEMENT-BINDING PROTEIN // SUBFAMILY NOT NAMED Chr05 + View
Corchorus olitorius COL.COLO4_22056 hypothetical protein AWUE01017846.1 - View
Carica papaya Cpa.g.sc62.160 supercontig_62 + View
Carica papaya Cpa.g.sc6.130 supercontig_6 + View
Chenopodium quinoa AUR62016750 BHLH62: Transcription factor bHLH62 C_Quinoa_Scaffold_3670 + View
Chenopodium quinoa AUR62011307 BHLH63: Transcription factor bHLH63 C_Quinoa_Scaffold_3333 - View
Capsella rubella Carub.0007s0379 scaffold_7 - View
Capsella rubella Carub.0003s3247 PTHR12565//PTHR12565:SF132 - STEROL REGULATORY ELEMENT-BINDING PROTEIN // TRANSCRIPTION FACTOR BEE 2-RELATED scaffold_3 - View
Cucumis sativus L. CsaV3_7G000080 transcription factor bHLH49-like chr7 + View
Davidia involucrata Dinv13515 GWHABJS00000012 + View
Davidia involucrata Dinv39994 GWHABJS00000014 - View
Davidia involucrata Dinv23511 GWHABJS00000005 - View
Davidia involucrata Dinv42055 GWHABJS00000002 + View
Durio zibethinus Duzib187G0645 NW_019167860.1 + View
Durio zibethinus Duzib248G1153 NW_019168048.1 + View
Durio zibethinus Duzib147G1501 NW_019168470.1 + View
Erigeron canadensis ECA238G0608 Conyza_canadensis_scaffold:6 - View
Erigeron canadensis ECA236G3042 Conyza_canadensis_scaffold:3 + View
Eucalyptus grandis Eucgr.I01279 Chr09 + View
Eutrema salsugineum Thhalv10022772m.g PTHR12565:SF132 - TRANSCRIPTION FACTOR BEE 2-RELATED scaffold_11 + View
Eutrema salsugineum Thhalv10025820m.g scaffold_1 - View
Gossypium hirsutum Gohir.A03G195000 PTHR12565//PTHR12565:SF149 - STEROL REGULATORY ELEMENT-BINDING PROTEIN // SUBFAMILY NOT NAMED A03 + View
Gossypium hirsutum Gohir.D12G064300 PTHR12565//PTHR12565:SF132//PTHR12565:SF149 - STEROL REGULATORY ELEMENT-BINDING PROTEIN // TRANSCRIPTION FACTOR BEE 2-RELATED // SUBFAMILY NOT NAMED D12 - View
Gossypium hirsutum Gohir.A12G064500 PTHR12565//PTHR12565:SF132//PTHR12565:SF149 - STEROL REGULATORY ELEMENT-BINDING PROTEIN // TRANSCRIPTION FACTOR BEE 2-RELATED // SUBFAMILY NOT NAMED A12 - View
Glycine max Glyma.06G012200 PTHR12565//PTHR12565:SF149 - STEROL REGULATORY ELEMENT-BINDING PROTEIN // SUBFAMILY NOT NAMED Gm06 - View
Glycine max Glyma.04G012500 PTHR12565//PTHR12565:SF149 - STEROL REGULATORY ELEMENT-BINDING PROTEIN // SUBFAMILY NOT NAMED Gm04 - View
Gossypium raimondii Gorai.008G067500 Chr08 - View
Hydrangea macrophylla Hma1.2p1_0789F.1_g218310 Hma1.2p1_0789F.1 - View
Lonicera japonica Lj9A372G31 GWHAAZE00000009 + View
Lactuca sativa Lsat_1_v5_gn_2_76540 PTHR12565:SF132 - TRANSCRIPTION FACTOR BEE 2-RELATED Lsat_1_v8_lg_2 - View
Manihot esculenta Manes.02G095100 Chromosome02 + View
Nelumbo nucifera Nn1g04951 chr1 - View
Nicotiana tabacum Nitab4.5_0000136g0340 Myc-type, basic helix-loop-helix (bHLH) domain Nitab4.5_0000136 - View
Oryza sativa ssp. japonica Os02g0705500 bHLH transcription factor, Regulation of brassinosteroid signalling, Regulation of leaf angle and grain length Helix-loop-helix DNA-binding domain containing protein. chr02 - View
Petunia axillaris Peaxi162Scf00008g03526 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Peaxi162Scf00008 - View
Prunus persica Prupe.8G095700 Pp08 - View
Populus trichocarpa Potri.007G023600 PTHR12565//PTHR12565:SF132 - STEROL REGULATORY ELEMENT-BINDING PROTEIN // TRANSCRIPTION FACTOR BEE 2-RELATED Chr07 - View
Populus trichocarpa Potri.004G156000 PTHR12565//PTHR12565:SF149 - STEROL REGULATORY ELEMENT-BINDING PROTEIN // SUBFAMILY NOT NAMED Chr04 + View
Populus trichocarpa Potri.005G121850 PTHR12565//PTHR12565:SF132 - STEROL REGULATORY ELEMENT-BINDING PROTEIN // TRANSCRIPTION FACTOR BEE 2-RELATED Chr05 - View
Populus trichocarpa Potri.009G117300 PTHR12565//PTHR12565:SF149 - STEROL REGULATORY ELEMENT-BINDING PROTEIN // SUBFAMILY NOT NAMED Chr09 + View
Rhododendron simsii Rhsim11G0178500 chr11 + View
Salix brachista Sabra07G0020500 GWHAAZH00000007 - View
Salix brachista Sabra04G0104000 GWHAAZH00000004 + View
Salix brachista Sabra09G0090000 GWHAAZH00000009 + View
Simmondsia chinensis Sc08g0000560 GWHAASQ00000008 + View
Solanum lycopersicum Solyc01g109700.3 bHLH transcription factor 010 SL4.0ch01 + View
Solanum lycopersicum Solyc02g062690.3 bHLH transcription factor 012 SL4.0ch02 - View
Solanum lycopersicum Solyc03g034000.3 bHLH transcription factor 020 SL4.0ch03 - View
Schrenkiella parvula Sp7g34190 PTHR12565//PTHR12565:SF132 - STEROL REGULATORY ELEMENT-BINDING PROTEIN // TRANSCRIPTION FACTOR BEE 2-RELATED ch7-6 + View
Schrenkiella parvula Sp3g31710 PTHR12565:SF132 - TRANSCRIPTION FACTOR BEE 2-RELATED ch3-6 - View
Solanum pennellii Sopen02g013710 basic helix-loop-helix (bHLH) DNA-binding superfamily protein | FUNCTIONS IN: sequence-specific DNA binding transcription factor activity | INVOLVED IN: response to cytokinin stimulus, regulation of transcription | LOCATED IN: nucleus | EXPRESSED IN: 13 plant structures | EXPRESSED DURING: 8 growth stages | CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain , Helix-loop-helix DNA-binding | BEST Arabidopsis thaliana protein match is: BR enhanced expression 2 . Spenn-ch02 - View
Solanum pennellii Sopen03g006760 Encodes a transcription factor CIB1 (cryptochrome-interacting basic-helix-loop-helix). CIB1 interacts with CRY2 (cryptochrome 2) in a blue light-specific manner in yeast and Arabidopsis cells, and it acts together with additional CIB1-related proteins to promote CRY2-dependent floral initiation. CIB1 positively regulates FT expression. | cryptochrome-interacting basic-helix-loop-helix 1 (CIB1) | CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain , Helix-loop-helix DNA-binding | BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein Spenn-ch03 - View
Solanum pennellii Sopen01g051890 Encodes a transcription factor CIB1 (cryptochrome-interacting basic-helix-loop-helix). CIB1 interacts with CRY2 (cryptochrome 2) in a blue light-specific manner in yeast and Arabidopsis cells, and it acts together with additional CIB1-related proteins to promote CRY2-dependent floral initiation. CIB1 positively regulates FT expression. | cryptochrome-interacting basic-helix-loop-helix 1 (CIB1) | CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain , Helix-loop-helix DNA-binding | BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein Spenn-ch01 + View
Solanum tuberosum PGSC0003DMG400022578 Transcription factor bHLH63 ST4.03ch03 - View
Solanum tuberosum PGSC0003DMG400015482 Transcription factor bHLH63 ST4.03ch02 - View
Solanum tuberosum PGSC0003DMG400000711 Basic helix-loop-helix protein BHLH7 ST4.03ch01 + View
Trochodendron aralioides TAR381G1695 group11 + View
Trochodendron aralioides TAR376G0525 group14 + View
Theobroma cacao Thecc.01G033500 Basic helix-loop-helix DNA-binding superfamily protein Chromosome_1 - View
Theobroma cacao Thecc.02G083900 Cryptochrome-interacting basic-helix-loop-helix 1 Chromosome_2 - View
Tarenaya hassleriana THA.LOC104819779 transcription factor HBI1-like isoform X1 NW_010966177.1 - View
Tarenaya hassleriana THA.LOC104804232 transcription factor HBI1-like NW_010971389.1 + View
Tarenaya hassleriana THA.LOC104807458 transcription factor HBI1-like NW_010963495.1 + View
Tripterygium wilfordii TWI73G0536 NC_052232.1 + View
Vitis vinifera GSVIVG01018942001 chr4 + View