Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
A03p08570 A03 + View
C03p40630 C03 + View
C05p63200 C05 - View
A02p04560 A02 + View
C02p09490 C02 + View
C09p59050 C09 - View
A10p21560 A10 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG5G14330 LG-5 + View
Aethionema arabicum Aa31LG11G11620 LG-11 - View
Arabidopsis lyrata AL6G29020 scaffold_6 + View
Arabidopsis lyrata AL3G13610 scaffold_3 + View
Arabidopsis thaliana AT5G17920 Cobalamin-independent synthase family protein Encodes a cytosolic cobalamin-independent methionine synthase%2C involved in methionine regeneration via the activated methyl cycle (SAM cycle). The protein undergoes thiolation following treatment with the oxidant tert-butylhydroperoxide. ATMS1%3B FUNCTIONS IN: 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity%2C copper ion binding%2C methionine synthase activity%3B INVOLVED IN: response to cadmium ion%2C response to zinc ion%2C response to salt stress%2C methionine biosynthetic process%3B LOCATED IN: in 7 components%3B EXPRESSED IN: 12 plant structures%3B EXPRESSED DURING: seedling growth%2C seed development stages%3B CONTAINS InterPro DOMAIN/s: Cobalamin (vitamin B12)-independent methionine synthase MetE%2C N-terminal (InterPro:IPR013215)%2C Methionine synthase%2C vitamin-B12 independent (InterPro:IPR002629)%2C 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase (InterPro:IPR006276)%3B BEST Arabidopsis thaliana protein match is: methionine synthase 2 (TAIR:AT3G03780.3)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink). Chr5 + View
Arabidopsis thaliana AT3G03780 methionine synthase 2 Encodes a cytosolic methionine synthase%2C involved in methionine regeneration via the activated methyl cycle (or SAM cycle) methionine synthase 2 (MS2)%3B FUNCTIONS IN: 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity%2C methionine synthase activity%3B INVOLVED IN: response to cadmium ion%2C response to salt stress%2C methionine biosynthetic process%3B LOCATED IN: cytosol%2C apoplast%2C plasma membrane%2C chloroplast%2C chloroplast envelope%3B EXPRESSED IN: 8 plant structures%3B EXPRESSED DURING: L mature pollen stage%2C M germinated pollen stage%2C seedling growth%3B CONTAINS InterPro DOMAIN/s: Cobalamin (vitamin B12)-independent methionine synthase MetE%2C N-terminal (InterPro:IPR013215)%2C Methionine synthase%2C vitamin-B12 independent (InterPro:IPR002629)%2C 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase (InterPro:IPR006276)%3B BEST Arabidopsis thaliana protein match is: Cobalamin-independent synthase family protein (TAIR:AT5G17920.2)%3B Has 4502 Blast hits to 4490 proteins in 1700 species: Archae - 186%3B Bacteria - 3282%3B Metazoa - 14%3B Fungi - 208%3B Plants - 251%3B Viruses - 2%3B Other Eukaryotes - 559 (source: NCBI BLink). methionine synthase 2 (MS2)%3B FUNCTIONS IN: 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity%2C methionine synthase activity%3B INVOLVED IN: response to cadmium ion%2C response to salt stress%2C methionine biosynthetic process%3B LOCATED IN: cytosol%2C apoplast%2C plasma membrane%2C chloroplast%2C chloroplast envelope%3B EXPRESSED IN: 7 plant structures%3B EXPRESSED DURING: L mature pollen stage%2C M germinated pollen stage%2C seedling growth%3B CONTAINS InterPro DOMAIN/s: Cobalamin (vitamin B12)-independent methionine synthase MetE%2C N-terminal (InterPro:IPR013215)%2C Methionine synthase%2C vitamin-B12 independent (InterPro:IPR002629)%2C 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase (InterPro:IPR006276)%3B BEST Arabidopsis thaliana protein match is: Cobalamin-independent synthase family protein (TAIR:AT5G17920.2)%3B Has 4511 Blast hits to 4499 proteins in 1700 species: Archae - 186%3B Bacteria - 3291%3B Metazoa - 14%3B Fungi - 208%3B Plants - 251%3B Viruses - 2%3B Other Eukaryotes - 559 (source: NCBI BLink). Chr3 + View
Brassica carinata BcaB08g36724 ChrB08 - View
Brassica carinata BcaC03g13558 ChrC03 + View
Brassica carinata BcaC04g18740 ChrC04 - View
Brassica carinata BcaB05g23292 ChrB05 + View
Brassica carinata BcaB01g05165 ChrB01 + View
Brassica oleracea BolC2t06855H C2 + View
Brassica oleracea BolC5t34982H C5 - View
Brassica oleracea BolC3t13487H C3 + View
Brassica oleracea BolC3t16328H C3 + View
Brassica oleracea BolC9t58753H C9 - View
Brassica rapa BraA10t44217Z A10 - View
Brassica rapa BraA02t05417Z A02 + View
Brassica rapa BraA03t10182Z A03 + View
Cardamine hirsuta CARHR077850 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative Chr3 + View
Capsella rubella Carub.0003s0295 2.1.1.14 - 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase / Tetrahydropteroylglutamate-homocysteine transmethylase scaffold_3 + View
Capsella rubella Carub.0006s1613 2.1.1.14 - 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase / Tetrahydropteroylglutamate-homocysteine transmethylase scaffold_6 + View
Durio zibethinus Duzib106G0807 NW_019168492.1 - View
Durio zibethinus Duzib128G1095 NW_019168481.1 - View
Eucalyptus grandis Eucgr.K01508 Chr11 - View
Eucalyptus grandis Eucgr.A02126 Chr01 - View
Eutrema salsugineum Thhalv10020127m.g scaffold_13 - View
Eutrema salsugineum Thhalv10012750m.g scaffold_2 + View
Gossypium hirsutum Gohir.A08G219500 2.1.1.14 - 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase / Tetrahydropteroylglutamate-homocysteine transmethylase A08 - View
Gossypium hirsutum Gohir.A13G164600 2.1.1.14 - 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase / Tetrahydropteroylglutamate-homocysteine transmethylase A13 + View
Gossypium hirsutum Gohir.D13G167400 2.1.1.14 - 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase / Tetrahydropteroylglutamate-homocysteine transmethylase D13 + View
Glycine max Glyma.16G038300 K00549 - 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (metE) Gm16 + View
Glycine max Glyma.19G114500 K00549 - 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (metE) Gm19 - View
Gossypium raimondii Gorai.013G195000 Chr13 - View
Gossypium raimondii Gorai.004G251500 Chr04 - View
Lupinus albus Lalb_Chr22g0358901 K00549 - 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (metE) Lalb_Chr22 + View
Lupinus albus Lalb_Chr02g0157281 K00549 - 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (metE) Lalb_Chr02 - View
Lupinus albus Lalb_Chr14g0364641 PTHR30519:SF0 - 5-METHYLTETRAHYDROPTEROYLTRIGLUTAMATE--HOMOCYSTEINE METHYLTRANSFERASE Lalb_Chr14 - View
Manihot esculenta Manes.08G154700 Chromosome08 - View
Punica granatum PGR142G1370 NC_045128.1 + View
Schrenkiella parvula Sp6g26350 2.1.1.14 - 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase / Tetrahydropteroylglutamate-homocysteine transmethylase ch6-6 - View
Schrenkiella parvula Sp3g02760 2.1.1.14 - 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase / Tetrahydropteroylglutamate-homocysteine transmethylase ch3-1 + View
Trochodendron aralioides TAR633G1012 group2 + View
Tarenaya hassleriana THA.LOC104820786 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 1 NW_010966372.1 - View
Tarenaya hassleriana THA.LOC104827256 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 1-like NW_010967707.1 + View
Tarenaya hassleriana THA.LOC104802877 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 1-like NW_010970490.1 - View