Paralogs (intra-species colinear regions)
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| BolC9t55438H | C9 | - | View |
Orthologs (inter-species colinear regions)
| Organism | Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|---|
| Aethionema arabicum | Aa31LG9G12890 | LG-9 | - | View | |
| Arabidopsis lyrata | AL8G18200 | scaffold_8 | + | View | |
| Arabidopsis thaliana | AT5G42820 | Zinc finger C-x8-C-x5-C-x3-H type family protein U2 auxiliary factor small subunit. The atU2AF35b protein and its homolog%2C atU2AF35a%2C contain most of the conserved domains of hsU2AF35%2C including the psiRRM%2C one RS domain%2C two zinc fingers%2C and the two regions for interacting with U2AF large subunit. Both proteins lack the stretch of glycines present in human U2AF35. The sequences are overall 83%25 identical%2C and each Arabidopsis homolog shows approximately 70%25 similarity to hsU2AF35. U2AF(35) homologs were also identified from maize%2C rice and other plants with large-scale EST projects. Both genes are expressed in all major tissues%2C with atU2AF(35)a expressed at a higher level than atU2AF(35)b in most tissues. The expression patterns were different in roots: atU2AF(35)b expressed strongly in whole young roots and root tips and atU2AF(35)a limited to root vascular regions. U2AF35B%3B FUNCTIONS IN: RNA binding%2C zinc ion binding%2C nucleotide binding%2C nucleic acid binding%3B INVOLVED IN: photoperiodism%2C flowering%3B LOCATED IN: nucleus%3B EXPRESSED IN: 28 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C CCCH-type (InterPro:IPR000571)%2C RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%2C U2 auxiliary factor small subunit (InterPro:IPR009145)%3B BEST Arabidopsis thaliana protein match is: U2 snRNP auxiliary factor small subunit%2C putative (TAIR:AT1G27650.1)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink). | Chr5 | - | View |
| Brassica carinata | BcaC03g16502 | ChrC03 | + | View | |
| Brassica napus | C02p43180 | C02 | + | View | |
| Brassica rapa | BraA09t37610Z | A09 | - | View | |
| Eutrema salsugineum | Thhalv10003254m.g | PTHR12620//PTHR12620:SF15 - U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT // SUBFAMILY NOT NAMED | scaffold_17 | + | View |
| Schrenkiella parvula | Sp2g07520 | K12836 - splicing factor U2AF 35 kDa subunit (U2AF1) | ch2-4 | - | View |