Gene: Sp2g07520

General Information

Structural Information

  • Species Schrenkiella parvula
  • Gene Identifier Sp2g07520
  • Transcript Identifier Sp2g07520.1
  • Gene Type Coding gene
  • Location ch2-4 : 319490-320341 : negative

Gene Family Information

  • ID HOM05D000904
  • #Genes/#Species 662/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • id Sp2g07520.v2.2
  • pacid 45090856

Descriptions

  • Description K12836 - splicing factor U2AF 35 kDa subunit (U2AF1)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000398
IEA
InterPromRNA splicing, via spliceosome
GO:0048573
ISO
PLAZA Integrative Orthologyphotoperiodism, flowering AT5G42820

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
InterPronucleic acid binding
GO:0046872
IEA
InterPrometal ion binding
GO:0003723
IEA
InterProRNA binding
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT5G42820

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0089701
IEA
InterProU2AF complex
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT5G42820

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR035979 RNA-binding domain superfamily
IPR000571 Zinc finger, CCCH-type
IPR009145 U2 auxiliary factor small subunit
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
IPR000504 RNA recognition motif domain
IPR003954 RNA recognition motif domain, eukaryote
Mapman id Description
16.2.1.2.11.1 RNA processing.pre-mRNA splicing.U2-type-intron-specific major spliceosome.U2 small nuclear ribonucleoprotein particle (snRNP).U2AF pre-RNA splicing auxiliary factor heterodimer.small subunit U2AF1/U2AF35