Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
BcaB04g20043 ChrB04 + View
BcaC08g43168 ChrC08 - View
BcaC07g39453 ChrC07 + View
BcaC09g49979 ChrC09 + View
BcaC04g23236 ChrC04 - View
BcaB01g00656 ChrB01 - View
BcaC06g33120 ChrC06 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG4G18310 LG-4 + View
Aethionema arabicum Aa31LG1G16130 LG-1 - View
Acer truncatum Atru.chr3.1020 chr3 - View
Actinidia chinensis Actinidia11978 Lachesis_group11 + View
Arabidopsis lyrata AL5G29860 scaffold_5 + View
Arabidopsis lyrata AL8G43720 scaffold_8 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.B6C3DF PTHR21717//PTHR21717:SF27 - TELOMERIC REPEAT BINDING PROTEIN // TELOMERE REPEAT-BINDING FACTOR 2-RELATED arahy.Tifrunner.gnm1.Arahy.15 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.WDU6CI PTHR21717//PTHR21717:SF27 - TELOMERIC REPEAT BINDING PROTEIN // TELOMERE REPEAT-BINDING FACTOR 2-RELATED arahy.Tifrunner.gnm1.Arahy.05 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.D4IBRE PTHR21717//PTHR21717:SF27 - TELOMERIC REPEAT BINDING PROTEIN // TELOMERE REPEAT-BINDING FACTOR 2-RELATED arahy.Tifrunner.gnm1.Arahy.01 - View
Arabidopsis thaliana AT3G49850 telomere repeat binding factor 3 Encodes a telomeric DNA binding protein. In vitro%2C the protein preferentially binds double-stranded telomeric repeats%2C but it can also bind to the single G-rich telomeric strand. telomere repeat binding factor 3 (TRB3)%3B FUNCTIONS IN: single-stranded telomeric DNA binding%2C DNA binding%2C protein homodimerization activity%2C sequence-specific DNA binding transcription factor activity%2C double-stranded telomeric DNA binding%3B INVOLVED IN: in 7 processes%3B LOCATED IN: nucleus%2C nucleosome%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991)%2C SANT%2C DNA-binding (InterPro:IPR001005)%2C Homeodomain-like (InterPro:IPR009057)%2C Myb%2C DNA-binding (InterPro:IPR014778)%2C Histone H1/H5 (InterPro:IPR005818)%2C Myb transcription factor (InterPro:IPR015495)%2C Homeodomain-related (InterPro:IPR012287)%2C HTH transcriptional regulator%2C Myb-type%2C DNA-binding (InterPro:IPR017930)%3B BEST Arabidopsis thaliana protein match is: Homeodomain-like/winged-helix DNA-binding family protein (TAIR:AT5G67580.2)%3B Has 536 Blast hits to 530 proteins in 102 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 28%3B Fungi - 59%3B Plants - 395%3B Viruses - 0%3B Other Eukaryotes - 54 (source: NCBI BLink). Chr3 + View
Arabidopsis thaliana AT5G67580 Homeodomain-like/winged-helix DNA-binding family protein Encodes a telomeric DNA binding protein. In vitro%2C the protein preferentially binds double-stranded telomeric repeats%2C but it can also bind to the single G-rich telomeric strand. TRB2%3B FUNCTIONS IN: single-stranded telomeric DNA binding%2C DNA binding%2C protein homodimerization activity%2C sequence-specific DNA binding transcription factor activity%2C double-stranded telomeric DNA binding%3B INVOLVED IN: in 8 processes%3B LOCATED IN: nucleus%2C nucleosome%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991)%2C SANT%2C DNA-binding (InterPro:IPR001005)%2C Myb%2C DNA-binding (InterPro:IPR014778)%2C Homeodomain-like (InterPro:IPR009057)%2C Histone H1/H5 (InterPro:IPR005818)%2C Homeodomain-related (InterPro:IPR012287)%2C HTH transcriptional regulator%2C Myb-type%2C DNA-binding (InterPro:IPR017930)%3B BEST Arabidopsis thaliana protein match is: telomere repeat binding factor 3 (TAIR:AT3G49850.1)%3B Has 792 Blast hits to 790 proteins in 134 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 127%3B Fungi - 75%3B Plants - 516%3B Viruses - 0%3B Other Eukaryotes - 72 (source: NCBI BLink). Chr5 - View
Brassica napus A01p24420 A01 - View
Brassica napus C09p10820 C09 + View
Brassica napus C08p24900 C08 + View
Brassica napus C03p59630 C03 - View
Brassica napus A03p47550 A03 + View
Brassica napus A06p32840 A06 + View
Brassica napus C01p30440 C01 - View
Brassica napus A09p09260 A09 + View
Brassica napus A09p43020 A09 + View
Brassica napus C07p45540 C07 + View
Brassica napus C06p04680 C06 - View
Brassica oleracea BolC7t45075H C7 + View
Brassica oleracea BolC3t18225H C3 - View
Brassica oleracea BolC1t02987H C1 - View
Brassica oleracea BolC8t50108H C8 + View
Brassica oleracea BolC9t53977H C9 + View
Brassica rapa BraA03t13869Z A03 + View
Brassica rapa BraA01t02355Z A01 - View
Brassica rapa BraA09t36579Z A09 + View
Brassica rapa BraA06t26216Z A06 + View
Brassica rapa BraA09t39771Z A09 + View
Camellia sinensis var. sinensis CSS0029061 unnamed protein product [Coffea canephora] Chr1 + View
Cicer arietinum L. Ca_22103_v3 Ca_LG7_v3 + View
Cicer arietinum L. Ca_24682_v3 Ca_LG8_v3 + View
Corylus avellana Haze_15277 Similar to TRB1: Telomere repeat-binding factor 1 (Arabidopsis thaliana OX%3D3702) 11 + View
Coffea canephora Cc07_g07150 Telomere repeat-binding factor 2 chr7 - View
Cardamine hirsuta CARHR280010 Single myb histone Chr8 + View
Cardamine hirsuta CARHR158930 Single myb histone Chr5 + View
Carya illinoinensis CiPaw.02G001900 PTHR21717:SF27 - TELOMERE REPEAT-BINDING FACTOR 2-RELATED Chr02 + View
Carya illinoinensis CiPaw.01G004100 PTHR21717//PTHR21717:SF27 - TELOMERIC REPEAT BINDING PROTEIN // TELOMERE REPEAT-BINDING FACTOR 2-RELATED Chr01 + View
Citrullus lanatus ClCG01G017630 telomere repeat binding factor 3 LENGTH=295 CG_Chr01 - View
Cucumis melo MELO3C007640.2 telomere repeat-binding factor 2 isoform X1 chr08 - View
Capsella rubella Carub.0005s1621 PTHR21717//PTHR21717:SF27 - TELOMERIC REPEAT BINDING PROTEIN // TELOMERE REPEAT-BINDING FACTOR 2-RELATED scaffold_5 + View
Capsella rubella Carub.0008s2689 PTHR21717//PTHR21717:SF27 - TELOMERIC REPEAT BINDING PROTEIN // TELOMERE REPEAT-BINDING FACTOR 2-RELATED scaffold_8 + View
Cucumis sativus L. CsaV3_6G044170 telomere repeat-binding factor 1-like chr6 - View
Daucus carota DCAR_021465 hypothetical protein DCARv2_Chr6 - View
Davidia involucrata Dinv26937 GWHABJS00000014 - View
Durio zibethinus Duzib264G0181 NW_019167960.1 + View
Durio zibethinus Duzib147G1283 NW_019168470.1 + View
Durio zibethinus Duzib187G1596 NW_019167860.1 + View
Eutrema salsugineum Thhalv10010562m.g PTHR21717:SF27 - TELOMERE REPEAT-BINDING FACTOR 2-RELATED scaffold_16 - View
Eutrema salsugineum Thhalv10004691m.g PTHR21717:SF27 - TELOMERE REPEAT-BINDING FACTOR 2-RELATED scaffold_6 - View
Fragaria x ananassa FAN23G2844 PTHR21717:SF27 - TELOMERE REPEAT-BINDING FACTOR 2-RELATED Fvb1-3 - View
Fragaria x ananassa FAN26G1448 PTHR21717//PTHR21717:SF27 - TELOMERIC REPEAT BINDING PROTEIN // TELOMERE REPEAT-BINDING FACTOR 2-RELATED Fvb1-2 - View
Fragaria x ananassa FAN28G0894 PTHR21717//PTHR21717:SF17 - TELOMERIC REPEAT BINDING PROTEIN // TELOMERE REPEAT-BINDING FACTOR 4-RELATED Fvb1-1 + View
Fragaria vesca FvH4_1g17790 PTHR21717//PTHR21717:SF27 - TELOMERIC REPEAT BINDING PROTEIN // TELOMERE REPEAT-BINDING FACTOR 2-RELATED Fvb1 - View
Gossypium hirsutum Gohir.A11G214400 PTHR21717//PTHR21717:SF27 - TELOMERIC REPEAT BINDING PROTEIN // TELOMERE REPEAT-BINDING FACTOR 2-RELATED A11 + View
Gossypium hirsutum Gohir.D03G029100 PTHR21717//PTHR21717:SF27 - TELOMERIC REPEAT BINDING PROTEIN // TELOMERE REPEAT-BINDING FACTOR 2-RELATED D03 - View
Gossypium hirsutum Gohir.D11G209000 PTHR21717//PTHR21717:SF27 - TELOMERIC REPEAT BINDING PROTEIN // TELOMERE REPEAT-BINDING FACTOR 2-RELATED D11 - View
Gossypium hirsutum Gohir.A02G151200 PTHR21717//PTHR21717:SF27 - TELOMERIC REPEAT BINDING PROTEIN // TELOMERE REPEAT-BINDING FACTOR 2-RELATED A02 + View
Glycine max Glyma.05G106000 PTHR21717//PTHR21717:SF27 - TELOMERIC REPEAT BINDING PROTEIN // TELOMERE REPEAT-BINDING FACTOR 2-RELATED Gm05 - View
Glycine max Glyma.17G160500 PTHR21717//PTHR21717:SF27 - TELOMERIC REPEAT BINDING PROTEIN // TELOMERE REPEAT-BINDING FACTOR 2-RELATED Gm17 + View
Glycine max Glyma.11G047300 PTHR21717//PTHR21717:SF27 - TELOMERIC REPEAT BINDING PROTEIN // TELOMERE REPEAT-BINDING FACTOR 2-RELATED Gm11 + View
Glycine max Glyma.01G194600 PTHR21717//PTHR21717:SF27 - TELOMERIC REPEAT BINDING PROTEIN // TELOMERE REPEAT-BINDING FACTOR 2-RELATED Gm01 - View
Gossypium raimondii Gorai.007G224200 Chr07 - View
Lupinus albus Lalb_Chr16g0378881 PTHR21717:SF27 - TELOMERE REPEAT-BINDING FACTOR 2-RELATED Lalb_Chr16 - View
Lupinus albus Lalb_Chr09g0323631 PTHR21717:SF27 - TELOMERE REPEAT-BINDING FACTOR 2-RELATED Lalb_Chr09 - View
Lotus japonicus Lj2g0019460 PTHR21717//PTHR21717:SF27 - TELOMERIC REPEAT BINDING PROTEIN // TELOMERE REPEAT-BINDING FACTOR 2-RELATED chr2 + View
Lotus japonicus Lj4g0005827 PTHR21717//PTHR21717:SF27 - TELOMERIC REPEAT BINDING PROTEIN // TELOMERE REPEAT-BINDING FACTOR 2-RELATED chr4 - View
Lonicera japonica Lj7C99T13 GWHAAZE00000007 - View
Lactuca sativa Lsat_1_v5_gn_2_82680 PTHR21717:SF27 - TELOMERE REPEAT-BINDING FACTOR 2-RELATED Lsat_1_v8_lg_2 + View
Malus domestica MD15G1298000 telomere repeat binding factor 1 Chr15 - View
Malus domestica MD02G1186900 Homeodomain-like/winged-helix DNA-binding family protein Chr02 - View
Manihot esculenta Manes.13G111100 Chromosome13 + View
Manihot esculenta Manes.12G115100 Chromosome12 - View
Medicago truncatula Medtr5g015340 MYB transcription factor chr5 + View
Nelumbo nucifera Nn1g04540 chr1 + View
Nicotiana tabacum Nitab4.5_0000142g0120 Homeodomain-like, SANT/Myb domain, Myb domain, Linker histone H1/H5, domain H15, Winged helix-turn-helix DNA-binding domain Nitab4.5_0000142 - View
Olea europaea Oeu013324.1 chr18 - View
Prunus persica Prupe.6G219800 PTHR21717:SF27 - TELOMERE REPEAT-BINDING FACTOR 2-RELATED Pp06 + View
Pisum sativum Psat2g171680 Linker histone H1 and H5 family chr2LG1 - View
Papaver somniferum PSO170G1287 NC_039360.1 - View
Populus trichocarpa Potri.014G004900 PTHR21717//PTHR21717:SF27 - TELOMERIC REPEAT BINDING PROTEIN // TELOMERE REPEAT-BINDING FACTOR 2-RELATED Chr14 - View
Phaseolus vulgaris Phvul.002G010300 PTHR21717:SF27 - TELOMERE REPEAT-BINDING FACTOR 2-RELATED Chr02 + View
Phaseolus vulgaris Phvul.003G234600 Chr03 + View
Quercus lobata QL06p039525 6 + View
Rosa chinensis RcHm_v2.0_Chr2g0108241 RcHm_v2.0_Chr2 - View
Striga asiatica SGA_v2.0_scaffold15G07464 scaffold15 - View
Salvia bowleyana SalBow3G3075 GWHASIU00000006 - View
Salix brachista Sabra14G0004500 GWHAAZH00000014 - View
Salix brachista Sabra07G0003600 GWHAAZH00000007 - View
Sechium edule Sed0014323 LG10 - View
Sechium edule Sed0009800 LG14 - View
Schrenkiella parvula Sp5g12250 PTHR21717:SF27 - TELOMERE REPEAT-BINDING FACTOR 2-RELATED ch5-1 - View
Schrenkiella parvula Sp2g29070 PTHR21717:SF27 - TELOMERE REPEAT-BINDING FACTOR 2-RELATED ch2-4 + View
Trochodendron aralioides TAR625G1229 group4 - View
Theobroma cacao Thecc.01G073300 Homeodomain-like/winged-helix DNA-binding family protein Chromosome_1 - View
Tripterygium wilfordii TWI74G1583 NC_052234.1 + View