Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
BcaC07g39362 ChrC07 - View
BcaC09g49911 ChrC09 - View
BcaB01g00774 ChrB01 + View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG4G17380 LG-4 - View
Acer truncatum Atru.chr6.1902 chr6 - View
Arabidopsis lyrata AL5G28380 scaffold_5 - View
Amaranthus hybridus Ah.02g114650 AmaHy_arrow1_Scaffold_2 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.PT1JHX K03696 - ATP-dependent Clp protease ATP-binding subunit ClpC (clpC) arahy.Tifrunner.gnm1.Arahy.08 + View
Arabidopsis thaliana AT3G48870 Clp ATPase Encodes a nuclear encoded protein with similarity to Clpa regulatory subunit of CLP protease complex. The protein is localized to the chloroplast stroma. May function redundantly with TIC complex in chloroplast protein import. HSP93-III%3B FUNCTIONS IN: in 6 functions%3B INVOLVED IN: protein import into chloroplast stroma%2C chloroplast organization%3B LOCATED IN: in 7 components%3B EXPRESSED IN: guard cell%2C leaf%3B EXPRESSED DURING: seed development stages%3B CONTAINS InterPro DOMAIN/s: Clp ATPase%2C C-terminal (InterPro:IPR019489)%2C ATPase%2C AAA-type%2C core (InterPro:IPR003959)%2C ATPase%2C AAA-2 (InterPro:IPR013093)%2C ATPase%2C AAA+ type%2C core (InterPro:IPR003593)%2C Chaperonin clpA/B (InterPro:IPR001270)%2C Chaperonin ClpA/B%2C conserved site (InterPro:IPR018368)%2C UvrB/UvrC protein (InterPro:IPR001943)%2C Clp%2C N-terminal (InterPro:IPR004176)%3B BEST Arabidopsis thaliana protein match is: CLPC homologue 1 (TAIR:AT5G50920.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink). Chr3 - View
Brassica napus C08p23840 C08 - View
Brassica napus A06p18880 A06 + View
Brassica napus C01p31380 C01 + View
Brassica napus A01p25180 A01 + View
Brassica oleracea BolC1t03075H C1 + View
Brassica oleracea BolC8t50010H C8 - View
Brassica rapa BraA06t24971Z A06 + View
Brassica rapa BraA01t02426Z A01 + View
Corylus avellana Haze_07112 Similar to Chaperone protein ClpC, chloroplastic (Pisum sativum OX%3D3888) 4 + View
Citrus clementina Ciclev10030863m.g scaffold_4 - View
Cardamine hirsuta CARHR157680 Chaperone protein ClpB 1 Chr5 - View
Citrullus lanatus ClCG06G018330 [pt] ATP-dependent Clp protease ATP-binding subunit ClpB CG_Chr06 - View
Cucumis melo MELO3C026162.2 ATP-dependent clp protease chr02 - View
Chenopodium quinoa AUR62034768 CD4B: ATP-dependent Clp protease ATP-binding subunit ClpA homolog CD4B, chloroplastic C_Quinoa_Scaffold_3586 + View
Capsella rubella Carub.0005s1504 K03696 - ATP-dependent Clp protease ATP-binding subunit ClpC (clpC) scaffold_5 - View
Davidia involucrata Dinv13735 GWHABJS00000006 - View
Durio zibethinus Duzib205G0028 NW_019168381.1 - View
Durio zibethinus Duzib068G0301 NW_019167838.1 - View
Eutrema salsugineum Thhalv10010143m.g PF00004//PF02151//PF07728//PF10431 - ATPase family associated with various cellular activities (AAA) (AAA) // UvrB/uvrC motif (UVR) // AAA domain (dynein-related subfamily) (AAA_5) // C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) scaffold_16 + View
Fragaria x ananassa FAN04G3089 PTHR11638:SF119 - CHAPERONE PROTEIN CLPC1, CHLOROPLASTIC Fvb5-4 - View
Fragaria x ananassa FAN13G2516 PTHR11638:SF119 - CHAPERONE PROTEIN CLPC1, CHLOROPLASTIC Fvb5-2 - View
Fragaria x ananassa FAN18G4242 K03696 - ATP-dependent Clp protease ATP-binding subunit ClpC (clpC) Fvb5-1 - View
Fragaria x ananassa FAN08G0605 K03696 - ATP-dependent Clp protease ATP-binding subunit ClpC (clpC) Fvb5-3 + View
Fragaria vesca FvH4_5g09290 K03696 - ATP-dependent Clp protease ATP-binding subunit ClpC (clpC) Fvb5 - View
Gossypium hirsutum Gohir.A12G193350 PTHR11638:SF119 - CHAPERONE PROTEIN CLPC1, CHLOROPLASTIC A12 - View
Glycine max Glyma.05G201100 K03696 - ATP-dependent Clp protease ATP-binding subunit ClpC (clpC) Gm05 + View
Glycine max Glyma.04G200400 K03696 - ATP-dependent Clp protease ATP-binding subunit ClpC (clpC) Gm04 - View
Lupinus albus Lalb_Chr07g0183761 K03696 - ATP-dependent Clp protease ATP-binding subunit ClpC (clpC) Lalb_Chr07 - View
Lonicera japonica Lj5C88T5 GWHAAZE00000005 + View
Malus domestica MD14G1148700 CLPC homologue 1 Chr14 + View
Punica granatum PGR044G1784 NC_045134.1 - View
Populus trichocarpa Potri.015G105100 K03696 - ATP-dependent Clp protease ATP-binding subunit ClpC (clpC) Chr15 - View
Rosa chinensis RcHm_v2.0_Chr7g0188931 RcHm_v2.0_Chr7 + View
Salix brachista Sabra12G0078200 GWHAAZH00000012 - View
Salix brachista Sabra15G0125300 GWHAAZH00000015 - View
Schrenkiella parvula Sp5g13180 K03696 - ATP-dependent Clp protease ATP-binding subunit ClpC (clpC) ch5-1 + View
Trochodendron aralioides TAR622G0976 group8 - View
Theobroma cacao Thecc.03G138700 CLPC Chromosome_3 - View
Tarenaya hassleriana THA.LOC104798922 chaperone protein ClpC1%2C chloroplastic-like NW_010968505.1 - View
Tarenaya hassleriana THA.LOC104821539 chaperone protein ClpC1%2C chloroplastic NW_010966459.1 - View
Trifolium pratense TPR.G12887 Tp57577_TGAC_v2_LG3 + View
Tripterygium wilfordii TWI23G0413 NC_052239.1 + View
Tripterygium wilfordii TWI39G0664 NC_052250.1 - View
Tripterygium wilfordii TWI14G1372 NC_052249.1 + View
Vaccinium macrocarpon vmacro19168 Similar to CD4B: ATP-dependent Clp protease ATP-binding subunit ClpA homolog CD4B, chloroplastic (Solanum lycopersicum OX%3D4081) chr5_Vaccinium_macrocarpon_Stevens_v1 + View
Vaccinium macrocarpon vmacro16750 Similar to Chaperone protein ClpC, chloroplastic (Pisum sativum OX%3D3888) chr4_Vaccinium_macrocarpon_Stevens_v1 - View