Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
AT2G25340 vesicle-associated membrane protein 712 Member of Synaptobrevin-like AtVAMP7C%2C v-SNARE protein family. vesicle-associated membrane protein 712 (VAMP712)%3B INVOLVED IN: transport%2C vesicle-mediated transport%3B LOCATED IN: vacuolar membrane%2C membrane%3B EXPRESSED IN: 10 plant structures%3B EXPRESSED DURING: LP.04 four leaves visible%2C 4 anthesis%2C petal differentiation and expansion stage%2C LP.08 eight leaves visible%3B CONTAINS InterPro DOMAIN/s: Longin (InterPro:IPR010908)%2C Longin-like (InterPro:IPR011012)%2C Synaptobrevin (InterPro:IPR001388)%3B BEST Arabidopsis thaliana protein match is: vesicle-associated membrane protein 713 (TAIR:AT5G11150.1)%3B Has 2449 Blast hits to 2448 proteins in 267 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 945%3B Fungi - 513%3B Plants - 550%3B Viruses - 3%3B Other Eukaryotes - 438 (source: NCBI BLink). Chr2 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG2G17810 LG-2 + View
Acer truncatum Atru.chr7.2454 chr7 + View
Actinidia chinensis Actinidia21948 Lachesis_group15 + View
Actinidia chinensis Actinidia15667 Lachesis_group27 - View
Actinidia chinensis Actinidia14595 Lachesis_group14 - View
Arabidopsis lyrata AL7G19710 scaffold_7 + View
Amaranthus hybridus Ah.16g104560 Vesicle-associated membrane protein 711 (AtVAMP711) (v-SNARE synaptobrevin 7C) (AtVAMP7C) AmaHy_arrow1_Scaffold_16 + View
Brassica carinata BcaB03g12732 ChrB03 - View
Brassica carinata BcaC09g52001 ChrC09 - View
Brassica carinata BcaC01g01039 ChrC01 + View
Brassica carinata BcaNung03141 Contig1063 - View
Brassica napus A08p18340 A08 + View
Brassica oleracea BolC1t00676H C1 + View
Brassica oleracea BolC3t21058H C3 + View
Brassica rapa BraA08t33791Z A08 + View
Beta vulgaris EL10Ac2g04196 K08515 - vesicle-associated membrane protein 7 (VAMP7) Chr2_EL10_PGA_scaffold6 - View
Camellia sinensis var. sinensis CSS0046690 PREDICTED: vesicle-associated membrane protein 711 [Nicotiana tomentosiformis] Chr14 + View
Corylus avellana Haze_21499 Similar to VAMP713: Vesicle-associated membrane protein 713 (Arabidopsis thaliana OX%3D3702) 3 - View
Coffea canephora Cc08_g00470 Vesicle-associated membrane protein 713 chr8 - View
Citrus clementina Ciclev10009428m.g scaffold_1 - View
Carpinus fangiana Cfa013129 Cfa05 - View
Cardamine hirsuta CARHR116180 vesicle-associated membrane protein 712 Chr4 - View
Cardamine hirsuta CARHR240080 Vesicle-associated membrane protein 7C Chr7 - View
Carya illinoinensis CiPaw.07G224600 K08515 - vesicle-associated membrane protein 7 (VAMP7) Chr07 + View
Citrullus lanatus ClCG06G011560 vesicle-associated membrane protein 712 LENGTH=219 CG_Chr06 + View
Cucumis melo MELO3C010308.2 vesicle-associated membrane protein 711-like chr02 - View
Cucumis melo MELO3C003711.2 Vesicle-associated membrane protein chr04 + View
Carica papaya Cpa.g.sc217.14 supercontig_217 + View
Capsella rubella Carub.0006s0963 K08515 - vesicle-associated membrane protein 7 (VAMP7) scaffold_6 - View
Capsella rubella Carub.0007s0841 K08515 - vesicle-associated membrane protein 7 (VAMP7) scaffold_7 + View
Cucumis sativus L. CsaV3_3G046300 Vesicle-associated membrane protein, putative chr3 - View
Daucus carota DCAR_006211 hypothetical protein DCARv2_Chr2 - View
Durio zibethinus Duzib187G1787 NW_019167860.1 + View
Erigeron canadensis ECA246G4751 Conyza_canadensis_scaffold:8 + View
Eucalyptus grandis Eucgr.C02758 Chr03 - View
Erythranthe guttata Migut.A00029 scaffold_1 + View
Eutrema salsugineum Thhalv10026196m.g K08515 - vesicle-associated membrane protein 7 (VAMP7) scaffold_1 + View
Fragaria x ananassa FAN15G0146 K08515 - vesicle-associated membrane protein 7 (VAMP7) Fvb2-4 - View
Fragaria x ananassa FAN27G0111 K08515 - vesicle-associated membrane protein 7 (VAMP7) Fvb2-1 - View
Fragaria x ananassa FAN20G2239 K08515 - vesicle-associated membrane protein 7 (VAMP7) Fvb2-3 - View
Fragaria vesca FvH4_2g28860 PTHR21136//PTHR21136:SF104 - SNARE PROTEINS // SUBFAMILY NOT NAMED Fvb2 - View
Gossypium hirsutum Gohir.A05G055701 PTHR21136//PTHR21136:SF104 - SNARE PROTEINS // SUBFAMILY NOT NAMED A05 + View
Gossypium hirsutum Gohir.D05G057800 K08515 - vesicle-associated membrane protein 7 (VAMP7) D05 + View
Gossypium hirsutum Gohir.A13G181200 K08515 - vesicle-associated membrane protein 7 (VAMP7) A13 - View
Gossypium hirsutum Gohir.A07G029200 K08515 - vesicle-associated membrane protein 7 (VAMP7) A07 + View
Gossypium hirsutum Gohir.D07G033200 K08515 - vesicle-associated membrane protein 7 (VAMP7) D07 + View
Gossypium hirsutum Gohir.D13G189000 K08515 - vesicle-associated membrane protein 7 (VAMP7) D13 - View
Gossypium raimondii Gorai.009G058900 Chr09 + View
Gossypium raimondii Gorai.001G034800 Chr01 + View
Gossypium raimondii Gorai.013G214400 Chr13 - View
Lupinus albus Lalb_Chr07g0179281 K08515 - vesicle-associated membrane protein 7 (VAMP7) Lalb_Chr07 + View
Lonicera japonica Lj7A724T58 GWHAAZE00000007 + View
Lonicera japonica Lj8A721T47 GWHAAZE00000008 + View
Lactuca sativa Lsat_1_v5_gn_5_30141 K08515 - vesicle-associated membrane protein 7 (VAMP7) Lsat_1_v8_lg_5 - View
Lactuca sativa Lsat_1_v5_gn_6_20721 Lsat_1_v8_lg_6 - View
Malus domestica MD15G1126900 vesicle-associated membrane protein 713 Chr15 + View
Manihot esculenta Manes.16G123300 Chromosome16 + View
Manihot esculenta Manes.03G013400 Chromosome03 - View
Nicotiana tabacum Nitab4.5_0002042g0020 Synaptobrevin, Longin domain, Longin-like domain Nitab4.5_0002042 - View
Olea europaea Oeu060146.1 chr4 - View
Petunia axillaris Peaxi162Scf00643g00112 vesicle-associated membrane protein 713 Peaxi162Scf00643 - View
Punica granatum PGR044G1325 NC_045134.1 + View
Prunus persica Prupe.1G482600 PTHR21136//PTHR21136:SF104 - SNARE PROTEINS // SUBFAMILY NOT NAMED Pp01 + View
Papaver somniferum PSO170G1764 NC_039360.1 + View
Populus trichocarpa Potri.018G025800 K08515 - vesicle-associated membrane protein 7 (VAMP7) Chr18 - View
Populus trichocarpa Potri.006G256200 K08515 - vesicle-associated membrane protein 7 (VAMP7) Chr06 + View
Quercus lobata QL02p021331 CM012294 - View
Striga asiatica SGA_v2.0_scaffold20G09105 scaffold20 + View
Salix brachista Sabra18G0028300 GWHAAZH00000018 - View
Salix brachista Sabra06G0200400 GWHAAZH00000006 + View
Simmondsia chinensis Sc09g0010230 GWHAASQ00000009 + View
Sechium edule Sed0025937 LG05 + View
Solanum lycopersicum Solyc06g065950.4 Vesicle-associated membrane protein (AHRD V3.3 *** A0A1U8GUV8_CAPAN) SL4.0ch06 - View
Schrenkiella parvula Sp4g04520 PTHR21136//PTHR21136:SF104 - SNARE PROTEINS // SUBFAMILY NOT NAMED ch4-2 - View
Schrenkiella parvula Sp7g29940 K08515 - vesicle-associated membrane protein 7 (VAMP7) ch7-5 - View
Solanum pennellii Sopen06g024430 AtVAMP711 is a member of Synaptobrevin-like AtVAMP7C, v-SNARE (soluble N-ethyl-maleimide sensitive factor attachment protein receptors) protein family. SNAREs have been divided into four subgroups: Qa-, Qb-, Qc- and R-SNAREs. R-SNAREs are classified into three groups, the Sec22-, YKT6- and VAMP7-like R-SNAREs. One R-SNARE and three Q-SNAREs (one of each subgroup) form the trans-SNARE complex, which governs specific membrane fusions. VAMP7 proteins consist of three distinct domain, the N-terminal longin-domain (LD), the SNARE motif (SNM) and a transmembrane domain. In spite of the high similarities among the VAMP7 proteins, they show different subcellular localizations. VAMP7C is vacuolar-localized and its LD is essential for the correct localization. Generally, it is suggested that the complete LD is the determinant of subcellular sorting in both animal and plant R-SNAREs. | vesicle-associated membrane protein 711 (VAMP711) | INVOLVED IN: intermembrane transport, response to salt stress, cellular membrane fusion, response to abscisic acid stimulus, stomatal movement | LOCATED IN: vacuolar membrane, plasma membrane, vacuole, membrane | EXPRESSED IN: 24 plant structures | EXPRESSED DURING: 15 growth stages | CONTAINS InterPro DOMAIN/s: Longin , Longin-like , Synaptobrevin | BEST Arabidopsis thaliana protein match is: vesicle-associated membrane protein 713 Spenn-ch06 - View
Solanum tuberosum PGSC0003DMG400026142 Vesicle-associated membrane protein ST4.03ch06 + View
Selenicereus undatus Hund04501 Scaffold_19641 - View
Trochodendron aralioides TAR636G2697 group1 - View
Trochodendron aralioides TAR625G0015 group4 - View
Trochodendron aralioides TAR383G0387 group10 - View
Tarenaya hassleriana THA.LOC104818614 vesicle-associated membrane protein 711-like NW_010966177.1 - View
Tarenaya hassleriana THA.LOC104803650 vesicle-associated membrane protein 711 NW_010971389.1 - View
Tripterygium wilfordii TWI63G1401 NC_052240.1 + View
Tripterygium wilfordii TWI63G1574 NC_052240.1 + View
Tripterygium wilfordii TWI34G1781 NC_052235.1 - View
Vaccinium macrocarpon vmacro11182 Similar to VAMP711: Vesicle-associated membrane protein 711 (Arabidopsis thaliana OX%3D3702) chr8_Vaccinium_macrocarpon_Stevens_v1 + View
Vaccinium macrocarpon vmacro05167 Similar to VAMP711: Vesicle-associated membrane protein 711 (Arabidopsis thaliana OX%3D3702) chr12_Vaccinium_macrocarpon_Stevens_v1 - View
Vitis vinifera GSVIVG01035876001 chr4 + View
Vitis vinifera GSVIVG01015598001 chr11 + View