Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
AT1G49240 actin 8 Member of a subclass of actins composed of ACT2 and ACT8. Its mRNA is strongly expressed in strongly expressed in leaves%2C roots%2C stems%2C flowers%2C pollen%2C and siliques. However%2C protein expression%2C assayed by a ACT8:GUS fusion reporter%2C is very low in pollen. actin 8 (ACT8)%3B FUNCTIONS IN: copper ion binding%2C structural constituent of cytoskeleton%3B INVOLVED IN: response to salt stress%2C root hair cell tip growth%2C cytoskeleton organization%3B LOCATED IN: plasma membrane%2C chloroplast%2C vacuole%3B EXPRESSED IN: 30 plant structures%3B EXPRESSED DURING: 17 growth stages%3B CONTAINS InterPro DOMAIN/s: Actin%2C conserved site (InterPro:IPR004001)%2C Actin/actin-like (InterPro:IPR004000)%2C Actin/actin-like conserved site (InterPro:IPR020902)%3B BEST Arabidopsis thaliana protein match is: actin 2 (TAIR:AT3G18780.2)%3B Has 15146 Blast hits to 14753 proteins in 3039 species: Archae - 6%3B Bacteria - 12%3B Metazoa - 5709%3B Fungi - 5217%3B Plants - 1599%3B Viruses - 2%3B Other Eukaryotes - 2601 (source: NCBI BLink). Chr1 + View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG8G5610 LG-8 + View
Actinidia chinensis Actinidia06663 Lachesis_group16 - View
Actinidia chinensis Actinidia09816 Lachesis_group11 - View
Arabidopsis lyrata AL3G32160 scaffold_3 + View
Arabidopsis lyrata AL1G56110 scaffold_1 + View
Aquilegia oxysepala Aqoxy5G02120 CHR05 + View
Brassica carinata BcaB06g25931 ChrB06 + View
Brassica carinata BcaB04g20747 ChrB04 - View
Brassica carinata BcaB04g19005 ChrB04 + View
Brassica carinata BcaC09g48846 ChrC09 + View
Brassica carinata BcaC05g28572 ChrC05 - View
Brassica carinata BcaC01g03675 ChrC01 - View
Brassica napus C03p49730 C03 + View
Brassica napus C05p46740 C05 - View
Brassica napus A05p30830 A05 - View
Brassica napus C01p45270 C01 - View
Brassica napus A01p35660 A01 - View
Brassica napus A03p40840 A03 + View
Brassica oleracea BolC5t33404H C5 - View
Brassica oleracea BolC1t04502H C1 - View
Brassica rapa BraA01t03648Z A01 - View
Brassica rapa BraA05t21925Z A05 - View
Cicer arietinum L. Ca_16916_v3 Ca_LG5_v3 - View
Corylus avellana Haze_25180 Similar to ACT7: Actin-7 (Arabidopsis thaliana OX%3D3702) 8 + View
Coffea canephora Cc07_g17400 Actin-7 chr7 - View
Citrus clementina Ciclev10025866m.g scaffold_7 + View
Carpinus fangiana Cfa002863 Cfa01 + View
Cardamine hirsuta CARHR094190 actin 2 Chr3 + View
Carya illinoinensis CiPaw.03G124400 PTHR11937//PTHR11937:SF247 - ACTIN // SUBFAMILY NOT NAMED Chr03 - View
Citrullus lanatus ClCG01G015660 Actin CG_Chr01 + View
Cucumis melo MELO3C008032.2 Actin chr08 - View
Carica papaya Cpa.g.sc42.93 supercontig_42 - View
Capsella rubella Carub.0003s1860 PTHR11937//PTHR11937:SF247 - ACTIN // SUBFAMILY NOT NAMED scaffold_3 + View
Capsella rubella Carub.0001s3843 PTHR11937//PTHR11937:SF247 - ACTIN // SUBFAMILY NOT NAMED scaffold_1 + View
Cucumis sativus L. CsaV3_6G041900 Actin chr6 + View
Davidia involucrata Dinv07951 GWHABJS00000021 + View
Davidia involucrata Dinv05187 GWHABJS00000014 - View
Durio zibethinus Duzib187G1997 NW_019167860.1 + View
Durio zibethinus Duzib147G0429 NW_019168470.1 + View
Eucalyptus grandis Eucgr.I00240 Chr09 + View
Eutrema salsugineum Thhalv10020906m.g scaffold_13 - View
Glycine max Glyma.04G215900 PTHR11937//PTHR11937:SF247 - ACTIN // SUBFAMILY NOT NAMED Gm04 + View
Glycine max Glyma.08G146500 PTHR11937//PTHR11937:SF217 - ACTIN // SUBFAMILY NOT NAMED Gm08 - View
Glycine max Glyma.05G188800 PTHR11937//PTHR11937:SF217 - ACTIN // SUBFAMILY NOT NAMED Gm05 - View
Glycine max Glyma.06G150100 PTHR11937//PTHR11937:SF200//PTHR11937:SF247 - ACTIN // ACTIN-7 // SUBFAMILY NOT NAMED Gm06 - View
Lupinus albus Lalb_Chr13g0296441 PTHR11937//PTHR11937:SF247 - ACTIN // SUBFAMILY NOT NAMED Lalb_Chr13 - View
Lupinus albus Lalb_Chr07g0184581 K10355 - actin, other eukaryote (ACTF) Lalb_Chr07 + View
Lotus japonicus Lj4g0021829 PTHR11937:SF200 - ACTIN-7 chr4 + View
Lotus japonicus Lj1g0015665 PTHR11937:SF200 - ACTIN-7 chr1 + View
Lonicera japonica Lj4A855T42 GWHAAZE00000004 + View
Manihot esculenta Manes.12G150500 Chromosome12 - View
Medicago truncatula Medtr3g095530 actin-related protein 4A chr3 - View
Nelumbo nucifera Nn5g28710 chr5 + View
Punica granatum PGR102G3348 NC_045129.1 - View
Papaver somniferum PSO675G1351 NC_039358.1 + View
Quercus lobata QL06p030615 6 + View
Rhododendron simsii Rhsim10G0141300 chr10 + View
Sechium edule Sed0007949 LG10 - View
Schrenkiella parvula Sp1g36120 PTHR11937//PTHR11937:SF247 - ACTIN // SUBFAMILY NOT NAMED ch1-2 + View
Schrenkiella parvula Sp3g16870 PTHR11937//PTHR11937:SF247 - ACTIN // SUBFAMILY NOT NAMED ch3-1 + View
Trochodendron aralioides TAR381G0558 group11 - View
Trochodendron aralioides TAR628G0374 group5 + View
Theobroma cacao Thecc.01G121900 DEAD/DEAH box RNA helicase family protein Chromosome_1 - View
Trifolium pratense TPR.G18711 Tp57577_TGAC_v2_LG5 + View
Tripterygium wilfordii TWI31G0865 NC_052233.1 + View
Tripterygium wilfordii TWI79G1716 NC_052238.1 + View
Tripterygium wilfordii TWI75G1631 NC_052253.1 - View
Vaccinium macrocarpon vmacro12833 Similar to ACT7: Actin-7 (Arabidopsis thaliana OX%3D3702) chr11_Vaccinium_macrocarpon_Stevens_v1 + View
Vitis vinifera GSVIVG01026580001 chr4 - View