Functional clusters
Information
- Type InterPro
- Description Small heat shock protein RTM2-like
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_8 | 5 | CH_amhyb_114 | 3 | 3 | 0.000000372002 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.17 | 5 | CH_arhy_376 | 4 | 4 | 0.00000000164834 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.07 | 5 | CH_arhy_817 | 3 | 4 | 0.0000176128 |
| Brassica carinata | ChrC03 | 5 | CH_bca_845 | 3 | 3 | 0.0000020049 |
| Brassica napus | C09 | 5 | CH_bna_680 | 3 | 3 | 0.0000028197 |
| Camellia sinensis var. sinensis | Chr2 | 5 | CH_camsi_861 | 3 | 8 | 0.0000211801 |
| Cicer arietinum L. | Ca_LG2_v3 | 5 | CH_car_370 | 2 | 2 | 0.000466981 |
| Corylus avellana | 1 | 5 | CH_cav_554 | 3 | 8 | 0.0000813658 |
| Corylus avellana | 10 | 5 | CH_cav_555 | 3 | 8 | 0.0000813658 |
| Carpinus fangiana | Cfa07 | 5 | CH_cfa_428 | 3 | 11 | 0.0000793859 |
| Carya illinoinensis | Chr11 | 5 | CH_cil_235 | 4 | 4 | 0.000000000715171 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2419 | 5 | CH_cqu_487 | 3 | 3 | 0.00000326328 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2738 | 5 | CH_cqu_488 | 3 | 3 | 0.00000326328 |
| Cucumis sativus L. | chr1 | 5 | CH_csa_240 | 3 | 4 | 0.00000234096 |
| Durio zibethinus | NW_019168492.1 | 5 | CH_dzi_275 | 3 | 3 | 0.00000219123 |
| Gossypium hirsutum | A08 | 5 | CH_ghi_663 | 3 | 3 | 0.00000480729 |
| Gossypium hirsutum | D08 | 5 | CH_ghi_738 | 3 | 4 | 0.0000192235 |
| Glycine max | Gm14 | 5 | CH_gma_475 | 3 | 3 | 0.00000632091 |
| Glycine max | Gm04 | 5 | CH_gma_533 | 3 | 4 | 0.0000252745 |
| Gossypium raimondii | Chr04 | 5 | CH_gra_364 | 3 | 4 | 0.00000965447 |
| Hydrangea macrophylla | Hma1.2p1_0218F.1 | 5 | CH_hma_483 | 2 | 2 | 0.000111086 |
| Lotus japonicus | Contig00564 | 5 | CH_lja_269 | 3 | 3 | 0.00000168747 |
| Magnolia biondii | Chr11 | 5 | CH_mbi_86 | 6 | 10 | 2.68043e-16 |
| Malus domestica | Chr14 | 5 | CH_mdo_676 | 3 | 4 | 0.00000483084 |
| Medicago truncatula | chr5 | 5 | CH_mtr_692 | 3 | 3 | 0.00000115214 |
| Medicago truncatula | chr6 | 5 | CH_mtr_784 | 3 | 4 | 0.00000460762 |
| Olea europaea | chr3 | 5 | CH_oeu_210 | 3 | 5 | 0.00000239287 |
| Petunia axillaris | Peaxi162Scf00345 | 5 | CH_pax_331 | 3 | 4 | 0.0000108075 |
| Prunus persica | Pp07 | 5 | CH_ppe_395 | 3 | 3 | 0.00000100167 |
| Pisum sativum | chr5LG3 | 5 | CH_psa_578 | 3 | 9 | 0.000191678 |
| Pisum sativum | chr2LG1 | 5 | CH_psa_78 | 5 | 6 | 0.00000000000145517 |
| Populus trichocarpa | Chr13 | 5 | CH_ptr_445 | 3 | 3 | 0.00000485607 |
| Populus trichocarpa | Chr09 | 5 | CH_ptr_446 | 3 | 3 | 0.00000485607 |
| Phaseolus vulgaris | Chr11 | 5 | CH_pvu_392 | 3 | 4 | 0.0000264188 |
| Rhododendron simsii | chr03 | 5 | CH_rsi_114 | 6 | 7 | 8.14368e-17 |
| Salix brachista | GWHAAZH00000013 | 5 | CH_sbr_172 | 4 | 4 | 0.00000000136629 |
| Sequoiadendron giganteum | chr3 | 5 | CH_sgi_182 | 8 | 17 | 2.46682e-21 |
| Solanum pennellii | Spenn-ch01 | 5 | CH_spe_341 | 3 | 3 | 0.000000652882 |
| Solanum tuberosum | ST4.03ch01 | 5 | CH_stu_403 | 3 | 3 | 0.000000866628 |
| Theobroma cacao | Chromosome_5 | 5 | CH_tca_208 | 4 | 4 | 0.000000000842743 |
| Theobroma cacao | Chromosome_3 | 5 | CH_tca_394 | 3 | 3 | 0.00000230119 |
| Trifolium pratense | Tp57577_TGAC_v2_LG4 | 5 | CH_tpr_292 | 3 | 4 | 0.00000192504 |
| Vigna mungo | CM024076.1 | 5 | CH_vmu_261 | 3 | 4 | 0.00000911573 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_8 | 6 | CH_amhyb_114 | 3 | 3 | 0.000000372002 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.17 | 6 | CH_arhy_376 | 4 | 4 | 0.00000000164834 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.07 | 6 | CH_arhy_817 | 3 | 4 | 0.0000176128 |
| Brassica carinata | ChrC03 | 6 | CH_bca_845 | 3 | 3 | 0.0000020049 |
| Brassica napus | C09 | 6 | CH_bna_680 | 3 | 3 | 0.0000028197 |
| Camellia sinensis var. sinensis | Chr2 | 6 | CH_camsi_861 | 3 | 8 | 0.0000211801 |
| Cicer arietinum L. | Ca_LG2_v3 | 6 | CH_car_370 | 2 | 2 | 0.000466981 |
| Corylus avellana | 1 | 6 | CH_cav_554 | 3 | 8 | 0.0000813658 |
| Corylus avellana | 10 | 6 | CH_cav_555 | 3 | 8 | 0.0000813658 |
| Carpinus fangiana | Cfa07 | 6 | CH_cfa_428 | 3 | 11 | 0.0000793859 |
| Carya illinoinensis | Chr11 | 6 | CH_cil_235 | 4 | 4 | 0.000000000715171 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2419 | 6 | CH_cqu_487 | 3 | 3 | 0.00000326328 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2738 | 6 | CH_cqu_488 | 3 | 3 | 0.00000326328 |
| Cucumis sativus L. | chr1 | 6 | CH_csa_240 | 3 | 4 | 0.00000234096 |
| Durio zibethinus | NW_019168492.1 | 6 | CH_dzi_275 | 3 | 3 | 0.00000219123 |
| Gossypium hirsutum | A08 | 6 | CH_ghi_663 | 3 | 3 | 0.00000480729 |
| Gossypium hirsutum | D08 | 6 | CH_ghi_738 | 3 | 4 | 0.0000192235 |
| Glycine max | Gm14 | 6 | CH_gma_475 | 3 | 3 | 0.00000632091 |
| Glycine max | Gm04 | 6 | CH_gma_533 | 3 | 4 | 0.0000252745 |
| Gossypium raimondii | Chr04 | 6 | CH_gra_364 | 3 | 4 | 0.00000965447 |
| Hydrangea macrophylla | Hma1.2p1_0218F.1 | 6 | CH_hma_483 | 2 | 2 | 0.000111086 |
| Lotus japonicus | Contig00564 | 6 | CH_lja_269 | 3 | 3 | 0.00000168747 |
| Magnolia biondii | Chr11 | 6 | CH_mbi_86 | 6 | 10 | 2.68043e-16 |
| Malus domestica | Chr14 | 6 | CH_mdo_676 | 3 | 4 | 0.00000483084 |
| Medicago truncatula | chr5 | 6 | CH_mtr_692 | 3 | 3 | 0.00000115214 |
| Medicago truncatula | chr6 | 6 | CH_mtr_784 | 3 | 4 | 0.00000460762 |
| Olea europaea | chr3 | 6 | CH_oeu_210 | 3 | 5 | 0.00000239287 |
| Petunia axillaris | Peaxi162Scf00345 | 6 | CH_pax_331 | 3 | 4 | 0.0000108075 |
| Prunus persica | Pp07 | 6 | CH_ppe_395 | 3 | 3 | 0.00000100167 |
| Pisum sativum | chr5LG3 | 6 | CH_psa_578 | 3 | 9 | 0.000191678 |
| Pisum sativum | chr2LG1 | 6 | CH_psa_78 | 5 | 6 | 0.00000000000145517 |
| Populus trichocarpa | Chr13 | 6 | CH_ptr_445 | 3 | 3 | 0.00000485607 |
| Populus trichocarpa | Chr09 | 6 | CH_ptr_446 | 3 | 3 | 0.00000485607 |
| Phaseolus vulgaris | Chr11 | 6 | CH_pvu_392 | 3 | 4 | 0.0000264188 |
| Rhododendron simsii | chr03 | 6 | CH_rsi_114 | 6 | 7 | 8.14368e-17 |
| Salix brachista | GWHAAZH00000013 | 6 | CH_sbr_172 | 4 | 4 | 0.00000000136629 |
| Sequoiadendron giganteum | chr3 | 6 | CH_sgi_182 | 8 | 17 | 2.46682e-21 |
| Solanum pennellii | Spenn-ch01 | 6 | CH_spe_341 | 3 | 3 | 0.000000652882 |
| Solanum tuberosum | ST4.03ch01 | 6 | CH_stu_403 | 3 | 3 | 0.000000866628 |
| Theobroma cacao | Chromosome_5 | 6 | CH_tca_208 | 4 | 4 | 0.000000000842743 |
| Theobroma cacao | Chromosome_3 | 6 | CH_tca_394 | 3 | 3 | 0.00000230119 |
| Trifolium pratense | Tp57577_TGAC_v2_LG4 | 6 | CH_tpr_292 | 3 | 4 | 0.00000192504 |
| Vigna mungo | CM024076.1 | 6 | CH_vmu_261 | 3 | 4 | 0.00000911573 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |