Functional clusters

Information

  • Type InterPro
  • Description Fasciclin-like arabinogalactan protein, group A

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr6 5 CH_acertr_254 5 47 0.0000000355817
Actinidia chinensis Lachesis_group22 5 CH_ach_148 3 3 0.000000531158
Actinidia chinensis Lachesis_group17 5 CH_ach_182 3 4 0.00000212427
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.13 5 CH_arhy_211 5 5 0.0000000000000934231
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.03 5 CH_arhy_411 4 6 0.00000000584829
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.18 5 CH_arhy_647 3 3 0.0000015327
Camellia sinensis var. sinensis Chr10 5 CH_camsi_298 4 4 0.000000000526472
Camellia sinensis var. sinensis Chr4 5 CH_camsi_49 8 12 8.55203e-22
Cannabis sativa NC_044375.1 5 CH_cansat_5 14 17 2.08093e-42
Capsicum annuum PGAv.1.6.scaffold1169 5 CH_can_179 4 4 0.000000000355222
Cicer arietinum L. Ca_LG1_v3 5 CH_car_127 3 3 0.00000330754
Cicer arietinum L. Ca_LG2_v3 5 CH_car_21 5 6 0.0000000000033054
Corylus avellana 6 5 CH_cav_23 9 9 3.39182e-27
Citrus clementina scaffold_8 5 CH_ccl_321 3 3 0.000000201881
Carpinus fangiana Cfa04 5 CH_cfa_12 11 11 1.83214e-32
Carpinus fangiana Cfa04 5 CH_cfa_168 4 4 0.0000000050517
Carya illinoinensis Chr14 5 CH_cil_259 4 4 0.00000000522625
Carya illinoinensis Chr13 5 CH_cil_9 13 13 2.43663e-39
Chenopodium quinoa C_Quinoa_Scaffold_1703 5 CH_cqu_1085 2 2 0.000995025
Davidia involucrata GWHABJS00000015 5 CH_din_276 3 3 0.000000315165
Glycine max Gm12 5 CH_gma_38 9 13 1.94309e-21
Glycine max Gm11 5 CH_gma_44 8 10 1.8972e-19
Glycine max Gm08 5 CH_gma_531 3 3 0.0000248082
Glycine max Gm11 5 CH_gma_606 3 4 0.0000991759
Lupinus albus Lalb_Chr03 5 CH_lal_342 3 4 0.00000925243
Lotus japonicus chr3 5 CH_lja_33 6 7 0.00000000000000147391
Lonicera japonica GWHAAZE00000001 5 CH_lonja_1242 2 2 0.000898311
Magnolia biondii Chr14 5 CH_mbi_247 5 30 0.000000000747345
Malus domestica Chr03 5 CH_mdo_1435 2 2 0.000796344
Manihot esculenta Chromosome11 5 CH_mes_78 7 7 4.74928e-19
Manihot esculenta Chromosome04 5 CH_mes_84 7 8 3.79789e-18
Medicago truncatula chr4 5 CH_mtr_625 4 13 0.000000454242
Medicago truncatula chr8 5 CH_mtr_725 3 3 0.00000206626
Medicago truncatula chr2 5 CH_mtr_726 3 3 0.00000206626
Medicago truncatula chr2 5 CH_mtr_727 3 3 0.00000206626
Olea europaea chr11 5 CH_oeu_30 5 5 0.0000000000000153465
Petunia axillaris Peaxi162Scf00182 5 CH_pax_654 2 2 0.000422134
Punica granatum NC_045132.1 5 CH_pgr_134 4 4 0.00000000026619
Prunus persica Pp06 5 CH_ppe_88 6 6 4.36726e-18
Pisum sativum chr5LG3 5 CH_psa_128 4 4 0.000000000581283
Pisum sativum chr7LG7 5 CH_psa_162 4 6 0.00000000871479
Populus trichocarpa Chr19 5 CH_ptr_167 5 6 0.000000000026676
Phaseolus vulgaris Chr11 5 CH_pvu_14 14 22 2.75664e-35
Quercus lobata 1 5 CH_qlo_45 11 12 7.79789e-34
Rhododendron simsii chr04 5 CH_rsi_260 5 16 0.000000000261945
Salvia bowleyana GWHASIU00000003 5 CH_sbo_172 6 58 0.0000000000148671
Simmondsia chinensis GWHAASQ00000021 5 CH_sci_544 2 2 0.000851426
Trochodendron aralioides group18 5 CH_tar_20 7 7 6.33083e-21
Trifolium pratense Tp57577_TGAC_v2_LG3 5 CH_tpr_330 3 3 0.00000391093
Trifolium pratense Tp57577_TGAC_v2_LG7 5 CH_tpr_331 3 3 0.00000391093
Trifolium pratense Tp57577_TGAC_v2_LG7 5 CH_tpr_403 3 4 0.0000156378
Trifolium pratense Tp57577_TGAC_v2_LG4 5 CH_tpr_437 3 5 0.0000390797
Vigna mungo CM024076.1 5 CH_vmu_12 9 16 1.19657e-22
Vitis vinifera chr8 5 CH_vvi_74 6 8 4.49201e-17
Acer truncatum chr6 6 CH_acertr_254 5 47 0.0000000355817
Actinidia chinensis Lachesis_group22 6 CH_ach_148 3 3 0.000000531158
Actinidia chinensis Lachesis_group17 6 CH_ach_182 3 4 0.00000212427
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.13 6 CH_arhy_211 5 5 0.0000000000000934231
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.03 6 CH_arhy_411 4 6 0.00000000584829
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.18 6 CH_arhy_647 3 3 0.0000015327
Camellia sinensis var. sinensis Chr10 6 CH_camsi_298 4 4 0.000000000526472
Camellia sinensis var. sinensis Chr4 6 CH_camsi_49 8 12 8.55203e-22
Cannabis sativa NC_044375.1 6 CH_cansat_5 14 17 2.08093e-42
Capsicum annuum PGAv.1.6.scaffold1169 6 CH_can_179 4 4 0.000000000355222
Cicer arietinum L. Ca_LG1_v3 6 CH_car_127 3 3 0.00000330754
Cicer arietinum L. Ca_LG2_v3 6 CH_car_21 5 6 0.0000000000033054
Corylus avellana 6 6 CH_cav_23 9 9 3.39182e-27
Citrus clementina scaffold_8 6 CH_ccl_321 3 3 0.000000201881
Carpinus fangiana Cfa04 6 CH_cfa_12 11 11 1.83214e-32
Carpinus fangiana Cfa04 6 CH_cfa_168 4 4 0.0000000050517
Carya illinoinensis Chr14 6 CH_cil_259 4 4 0.00000000522625
Carya illinoinensis Chr13 6 CH_cil_9 13 13 2.43663e-39
Chenopodium quinoa C_Quinoa_Scaffold_1703 6 CH_cqu_1085 2 2 0.000995025
Davidia involucrata GWHABJS00000015 6 CH_din_276 3 3 0.000000315165
Glycine max Gm12 6 CH_gma_38 9 13 1.94309e-21
Glycine max Gm11 6 CH_gma_44 8 10 1.8972e-19
Glycine max Gm08 6 CH_gma_531 3 3 0.0000248082
Glycine max Gm11 6 CH_gma_606 3 4 0.0000991759
Lupinus albus Lalb_Chr03 6 CH_lal_342 3 4 0.00000925243
Lotus japonicus chr3 6 CH_lja_33 6 7 0.00000000000000147391
Lonicera japonica GWHAAZE00000001 6 CH_lonja_1242 2 2 0.000898311
Magnolia biondii Chr14 6 CH_mbi_247 5 30 0.000000000747345
Malus domestica Chr03 6 CH_mdo_1435 2 2 0.000796344
Manihot esculenta Chromosome11 6 CH_mes_78 7 7 4.74928e-19
Manihot esculenta Chromosome04 6 CH_mes_84 7 8 3.79789e-18
Medicago truncatula chr4 6 CH_mtr_625 4 13 0.000000454242
Medicago truncatula chr8 6 CH_mtr_725 3 3 0.00000206626
Medicago truncatula chr2 6 CH_mtr_726 3 3 0.00000206626
Medicago truncatula chr2 6 CH_mtr_727 3 3 0.00000206626
Olea europaea chr11 6 CH_oeu_30 5 5 0.0000000000000153465
Petunia axillaris Peaxi162Scf00182 6 CH_pax_654 2 2 0.000422134
Punica granatum NC_045132.1 6 CH_pgr_134 4 4 0.00000000026619
Prunus persica Pp06 6 CH_ppe_88 6 6 4.36726e-18
Pisum sativum chr5LG3 6 CH_psa_128 4 4 0.000000000581283
Pisum sativum chr7LG7 6 CH_psa_162 4 6 0.00000000871479
Populus trichocarpa Chr19 6 CH_ptr_167 5 6 0.000000000026676
Phaseolus vulgaris Chr11 6 CH_pvu_14 14 22 2.75664e-35
Quercus lobata 1 6 CH_qlo_45 11 12 7.79789e-34
Rhododendron simsii chr04 6 CH_rsi_260 5 16 0.000000000261945
Salvia bowleyana GWHASIU00000003 6 CH_sbo_172 6 58 0.0000000000148671
Simmondsia chinensis GWHAASQ00000021 6 CH_sci_544 2 2 0.000851426
Trochodendron aralioides group18 6 CH_tar_20 7 7 6.33083e-21
Trifolium pratense Tp57577_TGAC_v2_LG3 6 CH_tpr_330 3 3 0.00000391093
Trifolium pratense Tp57577_TGAC_v2_LG7 6 CH_tpr_331 3 3 0.00000391093
Trifolium pratense Tp57577_TGAC_v2_LG7 6 CH_tpr_403 3 4 0.0000156378
Trifolium pratense Tp57577_TGAC_v2_LG4 6 CH_tpr_437 3 5 0.0000390797
Vigna mungo CM024076.1 6 CH_vmu_12 9 16 1.19657e-22
Vitis vinifera chr8 6 CH_vvi_74 6 8 4.49201e-17

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001