Functional clusters

Information

  • Type InterPro
  • Description Auxin response factor

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr6 5 CH_acertr_940 4 32 0.000554835
Avicennia marina ScioBoG_4119_HRSCAF_4138 5 CH_ama_140 3 3 0.000118878
Amaranthus hybridus AmaHy_arrow1_Scaffold_1 5 CH_amhyb_31 6 7 0.000000000000196943
Amborella trichopoda AmTr_v1.0_scaffold00061 5 CH_atr_49 6 6 0.00000000000000531356
Brassica carinata ChrC09 5 CH_bca_1378 3 3 0.0000889461
Brassica carinata ChrB02 5 CH_bca_1379 3 3 0.0000889461
Brassica carinata ChrB01 5 CH_bca_1380 3 3 0.0000889461
Brassica carinata ChrC03 5 CH_bca_1709 3 4 0.000355524
Brassica napus A05 5 CH_bna_1010 3 3 0.0000607145
Brassica rapa A09 5 CH_bra_159 4 7 0.000000120126
Camellia sinensis var. sinensis Chr11 5 CH_camsi_1162 3 5 0.000265744
Camellia sinensis var. sinensis Chr2 5 CH_camsi_1378 3 6 0.000531156
Coffea canephora chr3 5 CH_ccan_467 3 24 0.0000974556
Erigeron canadensis Conyza_canadensis_scaffold:7 5 CH_eca_501 3 4 0.0000353229
Fragaria vesca Fvb5 5 CH_fve_283 5 17 0.0000000236208
Lupinus albus Lalb_Chr20 5 CH_lal_192 4 4 0.000000108384
Lupinus albus Lalb_Chr03 5 CH_lal_331 5 25 0.00000695743
Lonicera japonica GWHAAZE00000005 5 CH_lonja_826 3 4 0.0000785846
Lactuca sativa Lsat_1_v8_lg_5 5 CH_lsa_788 3 6 0.00032128
Magnolia biondii Chr07 5 CH_mbi_192 5 6 0.0000000000425197
Magnolia biondii Chr07 5 CH_mbi_422 4 6 0.00000016203
Magnolia biondii Chr03 5 CH_mbi_803 3 7 0.0000635807
Medicago truncatula chr5 5 CH_mtr_294 7 29 0.0000000000264268
Oryza sativa ssp. japonica chr07 5 CH_osa_116 5 5 0.00000000000831576
Pisum sativum chr3LG5 5 CH_psa_103 7 28 0.0000000000707088
Pisum sativum chr7LG7 5 CH_psa_205 4 4 0.0000000578093
Pisum sativum chr5LG3 5 CH_psa_475 3 3 0.0000540574
Rhododendron simsii chr02 5 CH_rsi_242 5 7 0.0000000000718657
Simmondsia chinensis GWHAASQ00000001 5 CH_sci_222 3 3 0.0000105373
Sequoiadendron giganteum chr2 5 CH_sgi_1476 3 3 0.0000130076
Sequoiadendron giganteum HRSCAF_1 5 CH_sgi_339 6 6 0.00000000000000293305
Sequoiadendron giganteum chr10 5 CH_sgi_868 4 4 0.00000000823809
Sapria himalayana scaffold8_16897533 5 CH_shi_208 3 3 0.00000223157
Trochodendron aralioides group4 5 CH_tar_465 3 3 0.0000353872
Theobroma cacao Chromosome_4 5 CH_tca_453 3 3 0.0000142497
Vaccinium macrocarpon chr8_Vaccinium_macrocarpon_Stevens_v1 5 CH_vma_94 5 5 0.0000000000367947
Acer truncatum chr6 6 CH_acertr_940 4 32 0.000554835
Avicennia marina ScioBoG_4119_HRSCAF_4138 6 CH_ama_140 3 3 0.000118878
Amaranthus hybridus AmaHy_arrow1_Scaffold_1 6 CH_amhyb_31 6 7 0.000000000000196943
Amborella trichopoda AmTr_v1.0_scaffold00061 6 CH_atr_49 6 6 0.00000000000000531356
Brassica carinata ChrC09 6 CH_bca_1378 3 3 0.0000889461
Brassica carinata ChrB02 6 CH_bca_1379 3 3 0.0000889461
Brassica carinata ChrB01 6 CH_bca_1380 3 3 0.0000889461
Brassica carinata ChrC03 6 CH_bca_1709 3 4 0.000355524
Brassica napus A05 6 CH_bna_1010 3 3 0.0000607145
Brassica rapa A09 6 CH_bra_159 4 7 0.000000120126
Camellia sinensis var. sinensis Chr11 6 CH_camsi_1162 3 5 0.000265744
Camellia sinensis var. sinensis Chr2 6 CH_camsi_1378 3 6 0.000531156
Coffea canephora chr3 6 CH_ccan_467 3 24 0.0000974556
Erigeron canadensis Conyza_canadensis_scaffold:7 6 CH_eca_501 3 4 0.0000353229
Fragaria vesca Fvb5 6 CH_fve_283 5 17 0.0000000236208
Lupinus albus Lalb_Chr20 6 CH_lal_192 4 4 0.000000108384
Lupinus albus Lalb_Chr03 6 CH_lal_331 5 25 0.00000695743
Lonicera japonica GWHAAZE00000005 6 CH_lonja_826 3 4 0.0000785846
Lactuca sativa Lsat_1_v8_lg_5 6 CH_lsa_788 3 6 0.00032128
Magnolia biondii Chr07 6 CH_mbi_192 5 6 0.0000000000425197
Magnolia biondii Chr07 6 CH_mbi_422 4 6 0.00000016203
Magnolia biondii Chr03 6 CH_mbi_803 3 7 0.0000635807
Medicago truncatula chr5 6 CH_mtr_294 7 29 0.0000000000264268
Oryza sativa ssp. japonica chr07 6 CH_osa_116 5 5 0.00000000000831576
Pisum sativum chr3LG5 6 CH_psa_103 7 28 0.0000000000707088
Pisum sativum chr7LG7 6 CH_psa_205 4 4 0.0000000578093
Pisum sativum chr5LG3 6 CH_psa_475 3 3 0.0000540574
Rhododendron simsii chr02 6 CH_rsi_242 5 7 0.0000000000718657
Simmondsia chinensis GWHAASQ00000001 6 CH_sci_222 3 3 0.0000105373
Sequoiadendron giganteum chr2 6 CH_sgi_1476 3 3 0.0000130076
Sequoiadendron giganteum HRSCAF_1 6 CH_sgi_339 6 6 0.00000000000000293305
Sequoiadendron giganteum chr10 6 CH_sgi_868 4 4 0.00000000823809
Sapria himalayana scaffold8_16897533 6 CH_shi_208 3 3 0.00000223157
Trochodendron aralioides group4 6 CH_tar_465 3 3 0.0000353872
Theobroma cacao Chromosome_4 6 CH_tca_453 3 3 0.0000142497
Vaccinium macrocarpon chr8_Vaccinium_macrocarpon_Stevens_v1 6 CH_vma_94 5 5 0.0000000000367947

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001