Functional clusters

Information

  • Type InterPro
  • Description LysM domain receptor kinase CERK1/LYK3-like

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.17 5 CH_arhy_163 6 6 3.985e-16
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.07 5 CH_arhy_729 3 3 0.00000604342
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.14 5 CH_arhy_899 3 5 0.0000603944
Brassica oleracea C5 5 CH_bol_690 2 2 0.000196117
Brassica rapa A05 5 CH_bra_483 2 2 0.000257588
Beta vulgaris Chr5_EL10_PGA_scaffold2 5 CH_bvu_533 2 2 0.000827917
Capsicum annuum PGAv.1.6.scaffold1014 5 CH_can_357 3 3 0.000000859922
Capsicum annuum PGAv.1.6.scaffold134 5 CH_can_358 3 3 0.000000859922
Cicer arietinum L. Ca_LG2_v3 5 CH_car_248 3 11 0.000125725
Chara braunii BFEA01000592 5 CH_cbr_356 2 2 0.000719269
Coffea canephora chr5 5 CH_ccan_136 4 81 0.0000000115641
Ceratophyllum demersum 9 5 CH_cde_89 3 3 0.000000187141
Carya illinoinensis Chr04 5 CH_cil_236 4 6 0.000000000749984
Capsella rubella scaffold_3 5 CH_cru_552 2 2 0.000219346
Cucumis sativus L. chr5 5 CH_csa_466 2 2 0.000500856
Eucalyptus grandis Chr01 5 CH_egr_460 4 4 0.0000000000757894
Medicago truncatula chr5 5 CH_mtr_45 12 39 6.46665e-29
Olea europaea chr21 5 CH_oeu_638 2 2 0.000533789
Oryza sativa ssp. japonica chr09 5 CH_osa_765 2 2 0.000792184
Pisum sativum chr2LG1 5 CH_psa_328 3 4 0.00000466837
Quercus lobata 5 5 CH_qlo_245 6 7 9.91506e-17
Quercus lobata 8 5 CH_qlo_336 5 5 0.0000000000000685928
Rosa chinensis RcHm_v2.0_Chr2 5 CH_rch_1479 2 2 0.00083717
Rhododendron simsii chr04 5 CH_rsi_344 5 37 0.0000000142127
Simmondsia chinensis GWHAASQ00000012 5 CH_sci_110 3 3 0.0000000434974
Sequoiadendron giganteum chr5 5 CH_sgi_1292 3 4 0.00000119594
Solanum tuberosum ST4.03ch01 5 CH_stu_371 3 3 0.000000330894
Theobroma cacao Chromosome_1 5 CH_tca_389 3 4 0.00000180202
Trifolium pratense Tp57577_TGAC_v2_LG7 5 CH_tpr_374 3 3 0.00000979883
Trifolium pratense Tp57577_TGAC_v2_LG5 5 CH_tpr_5 12 26 1.32742e-28
Vaccinium macrocarpon chr6_Vaccinium_macrocarpon_Stevens_v1 5 CH_vma_236 5 62 0.000000450861
Vitis vinifera chr10 5 CH_vvi_308 3 3 0.000000303754
Zea mays 8 5 CH_zma_530 2 2 0.000766969
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.17 6 CH_arhy_163 6 6 3.985e-16
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.07 6 CH_arhy_729 3 3 0.00000604342
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.14 6 CH_arhy_899 3 5 0.0000603944
Brassica oleracea C5 6 CH_bol_690 2 2 0.000196117
Brassica rapa A05 6 CH_bra_483 2 2 0.000257588
Beta vulgaris Chr5_EL10_PGA_scaffold2 6 CH_bvu_533 2 2 0.000827917
Capsicum annuum PGAv.1.6.scaffold1014 6 CH_can_357 3 3 0.000000859922
Capsicum annuum PGAv.1.6.scaffold134 6 CH_can_358 3 3 0.000000859922
Cicer arietinum L. Ca_LG2_v3 6 CH_car_248 3 11 0.000125725
Chara braunii BFEA01000592 6 CH_cbr_356 2 2 0.000719269
Coffea canephora chr5 6 CH_ccan_136 4 81 0.0000000115641
Ceratophyllum demersum 9 6 CH_cde_89 3 3 0.000000187141
Carya illinoinensis Chr04 6 CH_cil_236 4 6 0.000000000749984
Capsella rubella scaffold_3 6 CH_cru_552 2 2 0.000219346
Cucumis sativus L. chr5 6 CH_csa_466 2 2 0.000500856
Eucalyptus grandis Chr01 6 CH_egr_460 4 4 0.0000000000757894
Medicago truncatula chr5 6 CH_mtr_45 12 39 6.46665e-29
Olea europaea chr21 6 CH_oeu_638 2 2 0.000533789
Oryza sativa ssp. japonica chr09 6 CH_osa_765 2 2 0.000792184
Pisum sativum chr2LG1 6 CH_psa_328 3 4 0.00000466837
Quercus lobata 5 6 CH_qlo_245 6 7 9.91506e-17
Quercus lobata 8 6 CH_qlo_336 5 5 0.0000000000000685928
Rosa chinensis RcHm_v2.0_Chr2 6 CH_rch_1479 2 2 0.00083717
Rhododendron simsii chr04 6 CH_rsi_344 5 37 0.0000000142127
Simmondsia chinensis GWHAASQ00000012 6 CH_sci_110 3 3 0.0000000434974
Sequoiadendron giganteum chr5 6 CH_sgi_1292 3 4 0.00000119594
Solanum tuberosum ST4.03ch01 6 CH_stu_371 3 3 0.000000330894
Theobroma cacao Chromosome_1 6 CH_tca_389 3 4 0.00000180202
Trifolium pratense Tp57577_TGAC_v2_LG7 6 CH_tpr_374 3 3 0.00000979883
Trifolium pratense Tp57577_TGAC_v2_LG5 6 CH_tpr_5 12 26 1.32742e-28
Vaccinium macrocarpon chr6_Vaccinium_macrocarpon_Stevens_v1 6 CH_vma_236 5 62 0.000000450861
Vitis vinifera chr10 6 CH_vvi_308 3 3 0.000000303754
Zea mays 8 6 CH_zma_530 2 2 0.000766969

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001