Functional clusters
Information
- Type InterPro
- Description E3 ubiquitin-protein ligase RING1-like
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Avicennia marina | ScioBoG_94932_HRSCAF_95134 | 5 | CH_ama_217 | 3 | 8 | 0.000709821 |
| Aquilegia oxysepala | CHR04 | 5 | CH_aox_227 | 3 | 3 | 0.00000351194 |
| Brassica carinata | ChrC09 | 5 | CH_bca_1179 | 3 | 3 | 0.000028558 |
| Brassica napus | A01 | 5 | CH_bna_1176 | 3 | 4 | 0.000215136 |
| Brassica oleracea | C1 | 5 | CH_bol_535 | 3 | 4 | 0.000041939 |
| Brassica rapa | A01 | 5 | CH_bra_357 | 3 | 3 | 0.0000603066 |
| Camellia sinensis var. sinensis | Chr1 | 5 | CH_camsi_212 | 5 | 6 | 0.00000000000669301 |
| Camellia sinensis var. sinensis | Chr11 | 5 | CH_camsi_402 | 4 | 5 | 0.0000000128027 |
| Carpinus fangiana | Cfa07 | 5 | CH_cfa_343 | 3 | 3 | 0.0000083372 |
| Carica papaya | supercontig_81 | 5 | CH_cpa_88 | 4 | 5 | 0.00000000637797 |
| Daucus carota | DCARv2_Chr8 | 5 | CH_dca_351 | 3 | 3 | 0.000015864 |
| Durio zibethinus | NW_019168470.1 | 5 | CH_dzi_414 | 3 | 4 | 0.000108668 |
| Durio zibethinus | NW_019168159.1 | 5 | CH_dzi_415 | 3 | 4 | 0.000108668 |
| Gossypium hirsutum | A10 | 5 | CH_ghi_786 | 3 | 3 | 0.0000384904 |
| Gossypium hirsutum | D10 | 5 | CH_ghi_787 | 3 | 3 | 0.0000384904 |
| Gossypium raimondii | Chr11 | 5 | CH_gra_383 | 3 | 3 | 0.0000193792 |
| Lonicera japonica | GWHAAZE00000008 | 5 | CH_lonja_573 | 3 | 3 | 0.00000244786 |
| Lactuca sativa | Lsat_1_v8_lg_4 | 5 | CH_lsa_269 | 4 | 4 | 0.00000000715053 |
| Magnolia biondii | Chr14 | 5 | CH_mbi_78 | 7 | 12 | 6.33714e-17 |
| Malus domestica | Chr07 | 5 | CH_mdo_401 | 4 | 5 | 0.0000000257278 |
| Medicago truncatula | chr7 | 5 | CH_mtr_1015 | 3 | 5 | 0.000092448 |
| Medicago truncatula | chr3 | 5 | CH_mtr_579 | 4 | 7 | 0.000000172754 |
| Olea europaea | chr8 | 5 | CH_oeu_510 | 4 | 38 | 0.000293908 |
| Petunia axillaris | Peaxi162Scf00745 | 5 | CH_pax_176 | 4 | 6 | 0.0000000606934 |
| Prunus persica | Pp06 | 5 | CH_ppe_274 | 4 | 4 | 0.00000000745392 |
| Pisum sativum | chr4LG4 | 5 | CH_psa_391 | 3 | 4 | 0.000025133 |
| Solanum pennellii | Spenn-ch01 | 5 | CH_spe_420 | 3 | 3 | 0.00000457017 |
| Solanum pennellii | Spenn-ch06 | 5 | CH_spe_421 | 3 | 3 | 0.00000457017 |
| Solanum tuberosum | ST4.03ch01 | 5 | CH_stu_267 | 4 | 4 | 0.00000000603611 |
| Zea mays | 3 | 5 | CH_zma_271 | 4 | 13 | 0.00000897613 |
| Zea mays | 4 | 5 | CH_zma_291 | 3 | 3 | 0.0000176281 |
| Avicennia marina | ScioBoG_94932_HRSCAF_95134 | 6 | CH_ama_217 | 3 | 8 | 0.000709821 |
| Aquilegia oxysepala | CHR04 | 6 | CH_aox_227 | 3 | 3 | 0.00000351194 |
| Brassica carinata | ChrC09 | 6 | CH_bca_1179 | 3 | 3 | 0.000028558 |
| Brassica napus | A01 | 6 | CH_bna_1176 | 3 | 4 | 0.000215136 |
| Brassica oleracea | C1 | 6 | CH_bol_535 | 3 | 4 | 0.000041939 |
| Brassica rapa | A01 | 6 | CH_bra_357 | 3 | 3 | 0.0000603066 |
| Camellia sinensis var. sinensis | Chr1 | 6 | CH_camsi_212 | 5 | 6 | 0.00000000000669301 |
| Camellia sinensis var. sinensis | Chr11 | 6 | CH_camsi_402 | 4 | 5 | 0.0000000128027 |
| Carpinus fangiana | Cfa07 | 6 | CH_cfa_343 | 3 | 3 | 0.0000083372 |
| Cucumis melo | chr12 | 6 | CH_cme_91 | 5 | 7 | 0.0000000000634291 |
| Carica papaya | supercontig_81 | 6 | CH_cpa_88 | 4 | 5 | 0.00000000637797 |
| Daucus carota | DCARv2_Chr8 | 6 | CH_dca_351 | 3 | 3 | 0.000015864 |
| Durio zibethinus | NW_019168470.1 | 6 | CH_dzi_414 | 3 | 4 | 0.000108668 |
| Durio zibethinus | NW_019168159.1 | 6 | CH_dzi_415 | 3 | 4 | 0.000108668 |
| Gossypium hirsutum | A10 | 6 | CH_ghi_786 | 3 | 3 | 0.0000384904 |
| Gossypium hirsutum | D10 | 6 | CH_ghi_787 | 3 | 3 | 0.0000384904 |
| Gossypium raimondii | Chr11 | 6 | CH_gra_383 | 3 | 3 | 0.0000193792 |
| Lonicera japonica | GWHAAZE00000008 | 6 | CH_lonja_573 | 3 | 3 | 0.00000244786 |
| Lactuca sativa | Lsat_1_v8_lg_4 | 6 | CH_lsa_269 | 4 | 4 | 0.00000000715053 |
| Magnolia biondii | Chr14 | 6 | CH_mbi_78 | 7 | 12 | 6.33714e-17 |
| Malus domestica | Chr07 | 6 | CH_mdo_401 | 4 | 5 | 0.0000000257278 |
| Medicago truncatula | chr7 | 6 | CH_mtr_1015 | 3 | 5 | 0.000092448 |
| Medicago truncatula | chr3 | 6 | CH_mtr_579 | 4 | 7 | 0.000000172754 |
| Olea europaea | chr8 | 6 | CH_oeu_510 | 4 | 38 | 0.000293908 |
| Petunia axillaris | Peaxi162Scf00745 | 6 | CH_pax_176 | 4 | 6 | 0.0000000606934 |
| Prunus persica | Pp06 | 6 | CH_ppe_274 | 4 | 4 | 0.00000000745392 |
| Pisum sativum | chr4LG4 | 6 | CH_psa_391 | 3 | 4 | 0.000025133 |
| Solanum pennellii | Spenn-ch01 | 6 | CH_spe_420 | 3 | 3 | 0.00000457017 |
| Solanum pennellii | Spenn-ch06 | 6 | CH_spe_421 | 3 | 3 | 0.00000457017 |
| Solanum tuberosum | ST4.03ch01 | 6 | CH_stu_267 | 4 | 4 | 0.00000000603611 |
| Zea mays | 3 | 6 | CH_zma_271 | 4 | 13 | 0.00000897613 |
| Zea mays | 4 | 6 | CH_zma_291 | 3 | 3 | 0.0000176281 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |