Functional clusters
Information
- Type InterPro
- Description C2H2-type zinc-finger protein AZF1/2/3-like
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aquilegia oxysepala | CHR03 | 5 | CH_aox_562 | 2 | 2 | 0.000801989 |
| Brassica carinata | ChrC06 | 5 | CH_bca_976 | 3 | 3 | 0.00000578233 |
| Camellia sinensis var. sinensis | Chr7 | 5 | CH_camsi_1436 | 2 | 2 | 0.000687821 |
| Carya illinoinensis | Chr09 | 5 | CH_cil_222 | 4 | 4 | 0.000000000353656 |
| Cucumis sativus L. | chr3 | 5 | CH_csa_194 | 3 | 3 | 0.000000209056 |
| Erythranthe guttata | scaffold_2 | 5 | CH_egut_80 | 6 | 6 | 2.30589e-16 |
| Fragaria vesca | Fvb2 | 5 | CH_fve_840 | 2 | 2 | 0.000883652 |
| Nelumbo nucifera | chr1 | 5 | CH_nnu_571 | 2 | 2 | 0.000481684 |
| Olea europaea | chr16 | 5 | CH_oeu_204 | 4 | 9 | 0.00000180365 |
| Olea europaea | chr16 | 5 | CH_oeu_265 | 3 | 3 | 0.000019212 |
| Olea europaea | chr15 | 5 | CH_oeu_7 | 12 | 34 | 1.79734e-25 |
| Oryza sativa ssp. japonica | chr07 | 5 | CH_osa_554 | 3 | 11 | 0.000143363 |
| Prunus persica | Pp06 | 5 | CH_ppe_862 | 2 | 2 | 0.000745962 |
| Papaver somniferum | NC_039365.1 | 5 | CH_pso_790 | 3 | 8 | 0.000023862 |
| Simmondsia chinensis | GWHAASQ00000018 | 5 | CH_sci_15 | 8 | 9 | 2.76318e-22 |
| Solanum lycopersicum | SL4.0ch12 | 5 | CH_sly_968 | 2 | 2 | 0.000880411 |
| Vitis vinifera | chr6 | 5 | CH_vvi_712 | 2 | 2 | 0.000456378 |
| Zea mays | 1 | 5 | CH_zma_126 | 4 | 5 | 0.0000000119974 |
| Zea mays | 2 | 5 | CH_zma_297 | 3 | 4 | 0.0000208558 |
| Zea mays | 9 | 5 | CH_zma_298 | 3 | 4 | 0.0000208558 |
| Aquilegia oxysepala | CHR03 | 6 | CH_aox_562 | 2 | 2 | 0.000801989 |
| Brassica carinata | ChrC06 | 6 | CH_bca_976 | 3 | 3 | 0.00000578233 |
| Camellia sinensis var. sinensis | Chr7 | 6 | CH_camsi_1436 | 2 | 2 | 0.000687821 |
| Carya illinoinensis | Chr09 | 6 | CH_cil_222 | 4 | 4 | 0.000000000353656 |
| Cucumis melo | chr06 | 6 | CH_cme_472 | 2 | 2 | 0.000667111 |
| Cucumis sativus L. | chr3 | 6 | CH_csa_194 | 3 | 3 | 0.000000209056 |
| Erythranthe guttata | scaffold_2 | 6 | CH_egut_80 | 6 | 6 | 2.30589e-16 |
| Fragaria vesca | Fvb2 | 6 | CH_fve_840 | 2 | 2 | 0.000883652 |
| Nelumbo nucifera | chr1 | 6 | CH_nnu_571 | 2 | 2 | 0.000481684 |
| Olea europaea | chr16 | 6 | CH_oeu_204 | 4 | 9 | 0.00000180365 |
| Olea europaea | chr16 | 6 | CH_oeu_265 | 3 | 3 | 0.000019212 |
| Olea europaea | chr15 | 6 | CH_oeu_7 | 12 | 34 | 1.79734e-25 |
| Oryza sativa ssp. japonica | chr07 | 6 | CH_osa_554 | 3 | 11 | 0.000143363 |
| Prunus persica | Pp06 | 6 | CH_ppe_862 | 2 | 2 | 0.000745962 |
| Papaver somniferum | NC_039365.1 | 6 | CH_pso_790 | 3 | 8 | 0.000023862 |
| Simmondsia chinensis | GWHAASQ00000018 | 6 | CH_sci_15 | 8 | 9 | 2.76318e-22 |
| Solanum lycopersicum | SL4.0ch12 | 6 | CH_sly_968 | 2 | 2 | 0.000880411 |
| Vitis vinifera | chr6 | 6 | CH_vvi_712 | 2 | 2 | 0.000456378 |
| Zea mays | 1 | 6 | CH_zma_126 | 4 | 5 | 0.0000000119974 |
| Zea mays | 2 | 6 | CH_zma_297 | 3 | 4 | 0.0000208558 |
| Zea mays | 9 | 6 | CH_zma_298 | 3 | 4 | 0.0000208558 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |