Functional clusters

Information

  • Type InterPro
  • Description Pentatricopeptide repeat-containing protein DG1/EMB2279-like

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Brassica carinata ChrB07 5 CH_bca_1962 2 3 0.000641272
Camellia sinensis var. sinensis Chr1 5 CH_camsi_624 3 8 0.000000706367
Erigeron canadensis Conyza_canadensis_scaffold:2 5 CH_eca_698 2 2 0.000269233
Fragaria vesca Fvb1 5 CH_fve_485 3 16 0.0000116531
Glycine max Gm05 5 CH_gma_762 2 2 0.000227734
Lonicera japonica GWHAAZE00000001 5 CH_lonja_955 2 2 0.000179662
Malus domestica Chr10 5 CH_mdo_422 3 3 0.0000000431413
Physcomitrium patens Chr10 5 CH_ppa_275 2 2 0.000183818
Quercus lobata 6 5 CH_qlo_1731 2 2 0.000516289
Rosa chinensis RcHm_v2.0_Chr2 5 CH_rch_716 3 10 0.000001144
Simmondsia chinensis GWHAASQ00000003 5 CH_sci_412 2 2 0.000255428
Sequoiadendron giganteum HRSCAF_1 5 CH_sgi_512 4 4 0.00000000000173426
Solanum lycopersicum SL4.0ch02 5 CH_sly_750 2 2 0.000176082
Trochodendron aralioides group9 5 CH_tar_718 2 2 0.00018011
Utricularia gibba unitig_0 5 CH_ugi_209 2 2 0.0000820479
Vanilla planifolia CM028162.1 5 CH_vpl_560 2 2 0.000221664
Brassica carinata ChrB07 6 CH_bca_1962 2 3 0.000641272
Camellia sinensis var. sinensis Chr1 6 CH_camsi_624 3 8 0.000000706367
Erigeron canadensis Conyza_canadensis_scaffold:2 6 CH_eca_698 2 2 0.000269233
Fragaria vesca Fvb1 6 CH_fve_485 3 16 0.0000116531
Glycine max Gm05 6 CH_gma_762 2 2 0.000227734
Lonicera japonica GWHAAZE00000001 6 CH_lonja_955 2 2 0.000179662
Malus domestica Chr10 6 CH_mdo_422 3 3 0.0000000431413
Physcomitrium patens Chr10 6 CH_ppa_275 2 2 0.000183818
Quercus lobata 6 6 CH_qlo_1731 2 2 0.000516289
Rosa chinensis RcHm_v2.0_Chr2 6 CH_rch_716 3 10 0.000001144
Simmondsia chinensis GWHAASQ00000003 6 CH_sci_412 2 2 0.000255428
Sequoiadendron giganteum HRSCAF_1 6 CH_sgi_512 4 4 0.00000000000173426
Solanum lycopersicum SL4.0ch02 6 CH_sly_750 2 2 0.000176082
Trochodendron aralioides group9 6 CH_tar_718 2 2 0.00018011
Utricularia gibba unitig_0 6 CH_ugi_209 2 2 0.0000820479
Vanilla planifolia CM028162.1 6 CH_vpl_560 2 2 0.000221664

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001