Functional clusters
Information
- Type InterPro
- Description Protein SUPPRESSOR OF GENE SILENCING 3
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Amborella trichopoda | AmTr_v1.0_scaffold00099 | 5 | CH_atr_613 | 2 | 3 | 0.000714919 |
| Capsicum annuum | PGAv.1.6.scaffold243 | 5 | CH_can_165 | 4 | 7 | 0.0000000000591963 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3429 | 5 | CH_cqu_864 | 2 | 2 | 0.000284293 |
| Daucus carota | DCARv2_Chr6 | 5 | CH_dca_199 | 3 | 4 | 0.0000000976195 |
| Gossypium raimondii | Chr11 | 5 | CH_gra_679 | 2 | 2 | 0.00080416 |
| Lactuca sativa | Lsat_1_v8_lg_5 | 5 | CH_lsa_291 | 3 | 3 | 0.0000000158526 |
| Medicago truncatula | chr3 | 5 | CH_mtr_1253 | 2 | 3 | 0.000369764 |
| Oryza sativa ssp. japonica | chr12 | 5 | CH_osa_566 | 2 | 3 | 0.000158433 |
| Prunus persica | Pp04 | 5 | CH_ppe_439 | 3 | 9 | 0.00000280356 |
| Populus trichocarpa | Chr03 | 5 | CH_ptr_76 | 6 | 6 | 6.70801e-18 |
| Salvia bowleyana | GWHASIU00000007 | 5 | CH_sbo_443 | 3 | 17 | 0.0000210983 |
| Salix brachista | GWHAAZH00000003 | 5 | CH_sbr_143 | 4 | 4 | 0.0000000000945895 |
| Sequoiadendron giganteum | chr2 | 5 | CH_sgi_1214 | 3 | 4 | 0.000000498328 |
| Trifolium pratense | Tp57577_TGAC_v2_scaf_291 | 5 | CH_tpr_632 | 2 | 2 | 0.000227092 |
| Utricularia gibba | unitig_748 | 5 | CH_ugi_202 | 2 | 2 | 0.0000820479 |
| Amborella trichopoda | AmTr_v1.0_scaffold00099 | 6 | CH_atr_613 | 2 | 3 | 0.000714919 |
| Capsicum annuum | PGAv.1.6.scaffold243 | 6 | CH_can_165 | 4 | 7 | 0.0000000000591963 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3429 | 6 | CH_cqu_864 | 2 | 2 | 0.000284293 |
| Daucus carota | DCARv2_Chr6 | 6 | CH_dca_199 | 3 | 4 | 0.0000000976195 |
| Gossypium raimondii | Chr11 | 6 | CH_gra_679 | 2 | 2 | 0.00080416 |
| Lactuca sativa | Lsat_1_v8_lg_5 | 6 | CH_lsa_291 | 3 | 3 | 0.0000000158526 |
| Medicago truncatula | chr3 | 6 | CH_mtr_1253 | 2 | 3 | 0.000369764 |
| Oryza sativa ssp. japonica | chr12 | 6 | CH_osa_566 | 2 | 3 | 0.000158433 |
| Prunus persica | Pp04 | 6 | CH_ppe_439 | 3 | 9 | 0.00000280356 |
| Populus trichocarpa | Chr03 | 6 | CH_ptr_76 | 6 | 6 | 6.70801e-18 |
| Salvia bowleyana | GWHASIU00000007 | 6 | CH_sbo_443 | 3 | 17 | 0.0000210983 |
| Salix brachista | GWHAAZH00000003 | 6 | CH_sbr_143 | 4 | 4 | 0.0000000000945895 |
| Sequoiadendron giganteum | chr2 | 6 | CH_sgi_1214 | 3 | 4 | 0.000000498328 |
| Trifolium pratense | Tp57577_TGAC_v2_scaf_291 | 6 | CH_tpr_632 | 2 | 2 | 0.000227092 |
| Utricularia gibba | unitig_748 | 6 | CH_ugi_202 | 2 | 2 | 0.0000820479 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |