Functional clusters
Information
- Type InterPro
- Description E3 ubiquitin-protein ligase SP1-like
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr5 | 5 | CH_acertr_792 | 2 | 2 | 0.000211491 |
| Arabidopsis lyrata | scaffold_1 | 5 | CH_aly_244 | 4 | 28 | 0.000000264426 |
| Brassica carinata | ChrB01 | 5 | CH_bca_635 | 3 | 3 | 0.000000311873 |
| Brassica napus | C03 | 5 | CH_bna_220 | 4 | 5 | 0.000000000228289 |
| Brassica napus | A03 | 5 | CH_bna_612 | 3 | 4 | 0.00000140557 |
| Brassica oleracea | C3 | 5 | CH_bol_133 | 4 | 6 | 0.000000000777723 |
| Brassica oleracea | C8 | 5 | CH_bol_147 | 4 | 7 | 0.00000000181447 |
| Brassica rapa | A03 | 5 | CH_bra_481 | 2 | 2 | 0.000257588 |
| Citrus clementina | scaffold_3 | 5 | CH_ccl_563 | 2 | 2 | 0.0000820311 |
| Capsella rubella | scaffold_1 | 5 | CH_cru_300 | 3 | 4 | 0.00000112251 |
| Erythranthe guttata | scaffold_14 | 5 | CH_egut_255 | 4 | 21 | 0.0000000346238 |
| Malus domestica | Chr11 | 5 | CH_mdo_1198 | 2 | 3 | 0.00034128 |
| Medicago truncatula | chr1 | 5 | CH_mtr_138 | 5 | 5 | 1.28249e-16 |
| Prunus persica | Pp08 | 5 | CH_ppe_197 | 4 | 8 | 0.0000000000871674 |
| Trifolium pratense | Tp57577_TGAC_v2_LG1 | 5 | CH_tpr_438 | 3 | 20 | 0.0000391512 |
| Acer truncatum | chr5 | 6 | CH_acertr_792 | 2 | 2 | 0.000211491 |
| Arabidopsis lyrata | scaffold_1 | 6 | CH_aly_244 | 4 | 28 | 0.000000264426 |
| Brassica carinata | ChrB01 | 6 | CH_bca_635 | 3 | 3 | 0.000000311873 |
| Brassica napus | C03 | 6 | CH_bna_220 | 4 | 5 | 0.000000000228289 |
| Brassica napus | A03 | 6 | CH_bna_612 | 3 | 4 | 0.00000140557 |
| Brassica oleracea | C3 | 6 | CH_bol_133 | 4 | 6 | 0.000000000777723 |
| Brassica oleracea | C8 | 6 | CH_bol_147 | 4 | 7 | 0.00000000181447 |
| Brassica rapa | A03 | 6 | CH_bra_481 | 2 | 2 | 0.000257588 |
| Citrus clementina | scaffold_3 | 6 | CH_ccl_563 | 2 | 2 | 0.0000820311 |
| Capsella rubella | scaffold_1 | 6 | CH_cru_300 | 3 | 4 | 0.00000112251 |
| Erythranthe guttata | scaffold_14 | 6 | CH_egut_255 | 4 | 21 | 0.0000000346238 |
| Malus domestica | Chr11 | 6 | CH_mdo_1198 | 2 | 3 | 0.00034128 |
| Medicago truncatula | chr1 | 6 | CH_mtr_138 | 5 | 5 | 1.28249e-16 |
| Prunus persica | Pp08 | 6 | CH_ppe_197 | 4 | 8 | 0.0000000000871674 |
| Trifolium pratense | Tp57577_TGAC_v2_LG1 | 6 | CH_tpr_438 | 3 | 20 | 0.0000391512 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |