Functional clusters

Information

  • Type InterPro
  • Description ABC transporter family G domain

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Anthoceros agrestis Sc2ySwM_340 5 CH_aag_43 6 11 0.00000000000187375
Aethionema arabicum LG-10 5 CH_aar_418 5 67 0.000799837
Acer truncatum chr8 5 CH_acertr_255 4 4 0.0000000378006
Aquilegia oxysepala CHR06 5 CH_aox_289 3 3 0.0000250853
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.03 5 CH_arhy_192 7 9 0.0000000000000208515
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.13 5 CH_arhy_228 7 12 0.000000000000457146
Camellia sinensis var. sinensis Chr11 5 CH_camsi_694 4 7 0.0000023256
Capsicum annuum PGAv.1.6.scaffold534 5 CH_can_195 5 6 0.000000000912742
Capsicum annuum PGAv.1.6.scaffold305 5 CH_can_531 3 3 0.0000795428
Cicer arietinum L. Ca_LG6_v3 5 CH_car_240 3 3 0.0000968636
Carya illinoinensis Chr03 5 CH_cil_615 3 3 0.0000996766
Carica papaya supercontig_19 5 CH_cpa_149 4 5 0.000000162912
Chenopodium quinoa C_Quinoa_Scaffold_1776 5 CH_cqu_531 4 8 0.00000758922
Daucus carota DCARv2_Chr1 5 CH_dca_716 3 4 0.000713181
Davidia involucrata GWHABJS00000002 5 CH_din_242 4 5 0.0000000864338
Eucalyptus grandis Chr09 5 CH_egr_1244 3 3 0.000319584
Eucalyptus grandis Chr02 5 CH_egr_324 7 8 0.0000000000000412055
Fragaria vesca Fvb1 5 CH_fve_532 3 3 0.0000554934
Gossypium hirsutum A07 5 CH_ghi_1318 3 4 0.000947863
Glycine max Gm08 5 CH_gma_128 6 7 0.0000000000067159
Glycine max Gm13 5 CH_gma_204 6 12 0.000000000880519
Gossypium raimondii Chr01 5 CH_gra_462 3 3 0.000119508
Lactuca sativa Lsat_1_v8_lg_5 5 CH_lsa_544 4 8 0.0000148125
Lactuca sativa Lsat_1_v8_lg_5 5 CH_lsa_660 3 3 0.000142634
Medicago truncatula chr4 5 CH_mtr_1405 3 5 0.000739653
Papaver somniferum NC_039358.1 5 CH_pso_647 4 8 0.00000324119
Phaseolus vulgaris Chr02 5 CH_pvu_207 5 7 0.00000001592
Phaseolus vulgaris Chr11 5 CH_pvu_505 3 3 0.000212442
Quercus lobata 5 5 CH_qlo_882 4 4 0.000000424776
Rosa chinensis RcHm_v2.0_Chr2 5 CH_rch_811 4 8 0.00000487037
Salix brachista GWHAAZH00000016 5 CH_sbr_314 4 6 0.00000167421
Salix brachista GWHAAZH00000001 5 CH_sbr_577 3 4 0.000337735
Sequoiadendron giganteum chr10 5 CH_sgi_271 10 29 3.2493e-17
Selaginella moellendorffii scaffold_88 5 CH_smo_250 4 12 0.000194752
Solanum pennellii Spenn-ch01 5 CH_spe_670 3 4 0.000168322
Trochodendron aralioides group16 5 CH_tar_292 4 4 0.000000256459
Vaccinium macrocarpon chr7_Vaccinium_macrocarpon_Stevens_v1 5 CH_vma_541 3 3 0.000224033
Vigna mungo CM024069.1 5 CH_vmu_553 3 4 0.000405751
Vitis vinifera chr4 5 CH_vvi_378 4 5 0.00000178459
Vitis vinifera chr3 5 CH_vvi_793 3 4 0.000766095
Anthoceros agrestis Sc2ySwM_340 6 CH_aag_43 6 11 0.00000000000187375
Aethionema arabicum LG-10 6 CH_aar_418 5 67 0.000799837
Acer truncatum chr8 6 CH_acertr_255 4 4 0.0000000378006
Aquilegia oxysepala CHR06 6 CH_aox_289 3 3 0.0000250853
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.03 6 CH_arhy_192 7 9 0.0000000000000208515
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.13 6 CH_arhy_228 7 12 0.000000000000457146
Camellia sinensis var. sinensis Chr11 6 CH_camsi_694 4 7 0.0000023256
Capsicum annuum PGAv.1.6.scaffold534 6 CH_can_195 5 6 0.000000000912742
Capsicum annuum PGAv.1.6.scaffold305 6 CH_can_531 3 3 0.0000795428
Cicer arietinum L. Ca_LG6_v3 6 CH_car_240 3 3 0.0000968636
Carya illinoinensis Chr03 6 CH_cil_615 3 3 0.0000996766
Carica papaya supercontig_19 6 CH_cpa_149 4 5 0.000000162912
Chenopodium quinoa C_Quinoa_Scaffold_1776 6 CH_cqu_531 4 8 0.00000758922
Daucus carota DCARv2_Chr1 6 CH_dca_716 3 4 0.000713181
Davidia involucrata GWHABJS00000002 6 CH_din_242 4 5 0.0000000864338
Eucalyptus grandis Chr09 6 CH_egr_1244 3 3 0.000319584
Eucalyptus grandis Chr02 6 CH_egr_324 7 8 0.0000000000000412055
Fragaria x ananassa Fvb2-2 6 CH_fan_1139 3 5 0.000652202
Fragaria vesca Fvb1 6 CH_fve_532 3 3 0.0000554934
Gossypium hirsutum A07 6 CH_ghi_1318 3 4 0.000947863
Glycine max Gm08 6 CH_gma_128 6 7 0.0000000000067159
Glycine max Gm13 6 CH_gma_204 6 12 0.000000000880519
Gossypium raimondii Chr01 6 CH_gra_462 3 3 0.000119508
Lactuca sativa Lsat_1_v8_lg_5 6 CH_lsa_544 4 8 0.0000148125
Lactuca sativa Lsat_1_v8_lg_5 6 CH_lsa_660 3 3 0.000142634
Medicago truncatula chr4 6 CH_mtr_1405 3 5 0.000739653
Papaver somniferum NC_039358.1 6 CH_pso_647 4 8 0.00000324119
Phaseolus vulgaris Chr02 6 CH_pvu_207 5 7 0.00000001592
Phaseolus vulgaris Chr11 6 CH_pvu_505 3 3 0.000212442
Quercus lobata 5 6 CH_qlo_882 4 4 0.000000424776
Rosa chinensis RcHm_v2.0_Chr2 6 CH_rch_811 4 8 0.00000487037
Salix brachista GWHAAZH00000016 6 CH_sbr_314 4 6 0.00000167421
Salix brachista GWHAAZH00000001 6 CH_sbr_577 3 4 0.000337735
Sequoiadendron giganteum chr10 6 CH_sgi_271 10 29 3.2493e-17
Selaginella moellendorffii scaffold_88 6 CH_smo_250 4 12 0.000194752
Solanum pennellii Spenn-ch01 6 CH_spe_670 3 4 0.000168322
Trochodendron aralioides group16 6 CH_tar_292 4 4 0.000000256459
Vaccinium macrocarpon chr7_Vaccinium_macrocarpon_Stevens_v1 6 CH_vma_541 3 3 0.000224033
Vigna mungo CM024069.1 6 CH_vmu_553 3 4 0.000405751
Vitis vinifera chr4 6 CH_vvi_378 4 5 0.00000178459
Vitis vinifera chr3 6 CH_vvi_793 3 4 0.000766095

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001