Functional clusters
Information
- Type InterPro
- Description ABC transporter family G domain
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Anthoceros agrestis | Sc2ySwM_340 | 5 | CH_aag_43 | 6 | 11 | 0.00000000000187375 |
| Aethionema arabicum | LG-10 | 5 | CH_aar_418 | 5 | 67 | 0.000799837 |
| Acer truncatum | chr8 | 5 | CH_acertr_255 | 4 | 4 | 0.0000000378006 |
| Aquilegia oxysepala | CHR06 | 5 | CH_aox_289 | 3 | 3 | 0.0000250853 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.03 | 5 | CH_arhy_192 | 7 | 9 | 0.0000000000000208515 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.13 | 5 | CH_arhy_228 | 7 | 12 | 0.000000000000457146 |
| Camellia sinensis var. sinensis | Chr11 | 5 | CH_camsi_694 | 4 | 7 | 0.0000023256 |
| Capsicum annuum | PGAv.1.6.scaffold534 | 5 | CH_can_195 | 5 | 6 | 0.000000000912742 |
| Capsicum annuum | PGAv.1.6.scaffold305 | 5 | CH_can_531 | 3 | 3 | 0.0000795428 |
| Cicer arietinum L. | Ca_LG6_v3 | 5 | CH_car_240 | 3 | 3 | 0.0000968636 |
| Carya illinoinensis | Chr03 | 5 | CH_cil_615 | 3 | 3 | 0.0000996766 |
| Carica papaya | supercontig_19 | 5 | CH_cpa_149 | 4 | 5 | 0.000000162912 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1776 | 5 | CH_cqu_531 | 4 | 8 | 0.00000758922 |
| Daucus carota | DCARv2_Chr1 | 5 | CH_dca_716 | 3 | 4 | 0.000713181 |
| Davidia involucrata | GWHABJS00000002 | 5 | CH_din_242 | 4 | 5 | 0.0000000864338 |
| Eucalyptus grandis | Chr09 | 5 | CH_egr_1244 | 3 | 3 | 0.000319584 |
| Eucalyptus grandis | Chr02 | 5 | CH_egr_324 | 7 | 8 | 0.0000000000000412055 |
| Fragaria vesca | Fvb1 | 5 | CH_fve_532 | 3 | 3 | 0.0000554934 |
| Gossypium hirsutum | A07 | 5 | CH_ghi_1318 | 3 | 4 | 0.000947863 |
| Glycine max | Gm08 | 5 | CH_gma_128 | 6 | 7 | 0.0000000000067159 |
| Glycine max | Gm13 | 5 | CH_gma_204 | 6 | 12 | 0.000000000880519 |
| Gossypium raimondii | Chr01 | 5 | CH_gra_462 | 3 | 3 | 0.000119508 |
| Lactuca sativa | Lsat_1_v8_lg_5 | 5 | CH_lsa_544 | 4 | 8 | 0.0000148125 |
| Lactuca sativa | Lsat_1_v8_lg_5 | 5 | CH_lsa_660 | 3 | 3 | 0.000142634 |
| Medicago truncatula | chr4 | 5 | CH_mtr_1405 | 3 | 5 | 0.000739653 |
| Papaver somniferum | NC_039358.1 | 5 | CH_pso_647 | 4 | 8 | 0.00000324119 |
| Phaseolus vulgaris | Chr02 | 5 | CH_pvu_207 | 5 | 7 | 0.00000001592 |
| Phaseolus vulgaris | Chr11 | 5 | CH_pvu_505 | 3 | 3 | 0.000212442 |
| Quercus lobata | 5 | 5 | CH_qlo_882 | 4 | 4 | 0.000000424776 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 5 | CH_rch_811 | 4 | 8 | 0.00000487037 |
| Salix brachista | GWHAAZH00000016 | 5 | CH_sbr_314 | 4 | 6 | 0.00000167421 |
| Salix brachista | GWHAAZH00000001 | 5 | CH_sbr_577 | 3 | 4 | 0.000337735 |
| Sequoiadendron giganteum | chr10 | 5 | CH_sgi_271 | 10 | 29 | 3.2493e-17 |
| Selaginella moellendorffii | scaffold_88 | 5 | CH_smo_250 | 4 | 12 | 0.000194752 |
| Solanum pennellii | Spenn-ch01 | 5 | CH_spe_670 | 3 | 4 | 0.000168322 |
| Trochodendron aralioides | group16 | 5 | CH_tar_292 | 4 | 4 | 0.000000256459 |
| Vaccinium macrocarpon | chr7_Vaccinium_macrocarpon_Stevens_v1 | 5 | CH_vma_541 | 3 | 3 | 0.000224033 |
| Vigna mungo | CM024069.1 | 5 | CH_vmu_553 | 3 | 4 | 0.000405751 |
| Vitis vinifera | chr4 | 5 | CH_vvi_378 | 4 | 5 | 0.00000178459 |
| Vitis vinifera | chr3 | 5 | CH_vvi_793 | 3 | 4 | 0.000766095 |
| Anthoceros agrestis | Sc2ySwM_340 | 6 | CH_aag_43 | 6 | 11 | 0.00000000000187375 |
| Aethionema arabicum | LG-10 | 6 | CH_aar_418 | 5 | 67 | 0.000799837 |
| Acer truncatum | chr8 | 6 | CH_acertr_255 | 4 | 4 | 0.0000000378006 |
| Aquilegia oxysepala | CHR06 | 6 | CH_aox_289 | 3 | 3 | 0.0000250853 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.03 | 6 | CH_arhy_192 | 7 | 9 | 0.0000000000000208515 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.13 | 6 | CH_arhy_228 | 7 | 12 | 0.000000000000457146 |
| Camellia sinensis var. sinensis | Chr11 | 6 | CH_camsi_694 | 4 | 7 | 0.0000023256 |
| Capsicum annuum | PGAv.1.6.scaffold534 | 6 | CH_can_195 | 5 | 6 | 0.000000000912742 |
| Capsicum annuum | PGAv.1.6.scaffold305 | 6 | CH_can_531 | 3 | 3 | 0.0000795428 |
| Cicer arietinum L. | Ca_LG6_v3 | 6 | CH_car_240 | 3 | 3 | 0.0000968636 |
| Carya illinoinensis | Chr03 | 6 | CH_cil_615 | 3 | 3 | 0.0000996766 |
| Carica papaya | supercontig_19 | 6 | CH_cpa_149 | 4 | 5 | 0.000000162912 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1776 | 6 | CH_cqu_531 | 4 | 8 | 0.00000758922 |
| Daucus carota | DCARv2_Chr1 | 6 | CH_dca_716 | 3 | 4 | 0.000713181 |
| Davidia involucrata | GWHABJS00000002 | 6 | CH_din_242 | 4 | 5 | 0.0000000864338 |
| Eucalyptus grandis | Chr09 | 6 | CH_egr_1244 | 3 | 3 | 0.000319584 |
| Eucalyptus grandis | Chr02 | 6 | CH_egr_324 | 7 | 8 | 0.0000000000000412055 |
| Fragaria x ananassa | Fvb2-2 | 6 | CH_fan_1139 | 3 | 5 | 0.000652202 |
| Fragaria vesca | Fvb1 | 6 | CH_fve_532 | 3 | 3 | 0.0000554934 |
| Gossypium hirsutum | A07 | 6 | CH_ghi_1318 | 3 | 4 | 0.000947863 |
| Glycine max | Gm08 | 6 | CH_gma_128 | 6 | 7 | 0.0000000000067159 |
| Glycine max | Gm13 | 6 | CH_gma_204 | 6 | 12 | 0.000000000880519 |
| Gossypium raimondii | Chr01 | 6 | CH_gra_462 | 3 | 3 | 0.000119508 |
| Lactuca sativa | Lsat_1_v8_lg_5 | 6 | CH_lsa_544 | 4 | 8 | 0.0000148125 |
| Lactuca sativa | Lsat_1_v8_lg_5 | 6 | CH_lsa_660 | 3 | 3 | 0.000142634 |
| Medicago truncatula | chr4 | 6 | CH_mtr_1405 | 3 | 5 | 0.000739653 |
| Papaver somniferum | NC_039358.1 | 6 | CH_pso_647 | 4 | 8 | 0.00000324119 |
| Phaseolus vulgaris | Chr02 | 6 | CH_pvu_207 | 5 | 7 | 0.00000001592 |
| Phaseolus vulgaris | Chr11 | 6 | CH_pvu_505 | 3 | 3 | 0.000212442 |
| Quercus lobata | 5 | 6 | CH_qlo_882 | 4 | 4 | 0.000000424776 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 6 | CH_rch_811 | 4 | 8 | 0.00000487037 |
| Salix brachista | GWHAAZH00000016 | 6 | CH_sbr_314 | 4 | 6 | 0.00000167421 |
| Salix brachista | GWHAAZH00000001 | 6 | CH_sbr_577 | 3 | 4 | 0.000337735 |
| Sequoiadendron giganteum | chr10 | 6 | CH_sgi_271 | 10 | 29 | 3.2493e-17 |
| Selaginella moellendorffii | scaffold_88 | 6 | CH_smo_250 | 4 | 12 | 0.000194752 |
| Solanum pennellii | Spenn-ch01 | 6 | CH_spe_670 | 3 | 4 | 0.000168322 |
| Trochodendron aralioides | group16 | 6 | CH_tar_292 | 4 | 4 | 0.000000256459 |
| Vaccinium macrocarpon | chr7_Vaccinium_macrocarpon_Stevens_v1 | 6 | CH_vma_541 | 3 | 3 | 0.000224033 |
| Vigna mungo | CM024069.1 | 6 | CH_vmu_553 | 3 | 4 | 0.000405751 |
| Vitis vinifera | chr4 | 6 | CH_vvi_378 | 4 | 5 | 0.00000178459 |
| Vitis vinifera | chr3 | 6 | CH_vvi_793 | 3 | 4 | 0.000766095 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |