Functional clusters

Information

  • Type InterPro
  • Description NPH3/RPT2-like family

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Amborella trichopoda AmTr_v1.0_scaffold00086 5 CH_atr_430 3 4 0.0000983815
Brassica carinata ChrC04 5 CH_bca_521 4 4 0.0000000818825
Chara braunii BFEA01000009 5 CH_cbr_143 3 10 0.00001861
Chenopodium quinoa C_Quinoa_Scaffold_4447 5 CH_cqu_968 4 25 0.000647572
Magnolia biondii Chr19 5 CH_mbi_310 4 4 0.0000000140633
Nicotiana tabacum Nitab4.5_0000101 5 CH_nta_187 3 4 0.0000960087
Olea europaea chr18 5 CH_oeu_701 4 30 0.000810352
Solanum lycopersicum SL4.0ch02 5 CH_sly_211 6 24 0.0000000023075
Vanilla planifolia CM028153.1 5 CH_vpl_742 3 5 0.000938049
Amborella trichopoda AmTr_v1.0_scaffold00086 6 CH_atr_430 3 4 0.0000983815
Brassica carinata ChrC04 6 CH_bca_521 4 4 0.0000000818825
Chara braunii BFEA01000009 6 CH_cbr_143 3 10 0.00001861
Chenopodium quinoa C_Quinoa_Scaffold_4447 6 CH_cqu_968 4 25 0.000647572
Magnolia biondii Chr19 6 CH_mbi_310 4 4 0.0000000140633
Nicotiana tabacum Nitab4.5_0000101 6 CH_nta_187 3 4 0.0000960087
Olea europaea chr18 6 CH_oeu_701 4 30 0.000810352
Solanum lycopersicum SL4.0ch02 6 CH_sly_211 6 24 0.0000000023075
Vanilla planifolia CM028153.1 6 CH_vpl_742 3 5 0.000938049

Available child term results

Ontology identifier Description Number of clusters
IPR029958 Root phototropism protein 2 2
IPR029959 Root phototropism protein 3-like 6
IPR029961 BTB/POZ domain-containing protein NPY1 2

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001