Functional clusters
Information
- Type InterPro
- Description Reverse transcriptase/Diguanylate cyclase domain
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Cicer arietinum L. | Ca_LG7_v3 | 5 | CH_car_190 | 4 | 5 | 0.0000682832 |
| Chara braunii | BFEA01000022 | 5 | CH_cbr_120 | 30 | 55 | 0.00000346728 |
| Fragaria vesca | Fvb4 | 5 | CH_fve_401 | 7 | 34 | 0.00000122809 |
| Papaver somniferum | NC_039358.1 | 5 | CH_pso_858 | 4 | 4 | 0.0000568136 |
| Sequoiadendron giganteum | chr11 | 5 | CH_sgi_2351 | 4 | 9 | 0.000331624 |
| Sequoiadendron giganteum | HRSCAF_1 | 5 | CH_sgi_2645 | 3 | 3 | 0.000950177 |
| Sapria himalayana | scaffold38_5640129 | 5 | CH_shi_63 | 20 | 57 | 0.000000000112489 |
| Solanum lycopersicum | SL4.0ch05 | 5 | CH_sly_533 | 4 | 11 | 0.0000296217 |
| Solanum pennellii | Spenn-ch07 | 5 | CH_spe_169 | 26 | 57 | 0.000000000676576 |
| Solanum pennellii | Spenn-ch09 | 5 | CH_spe_187 | 28 | 69 | 0.00000000254551 |
| Solanum pennellii | Spenn-ch09 | 5 | CH_spe_188 | 28 | 69 | 0.00000000254551 |
| Solanum pennellii | Spenn-ch05 | 5 | CH_spe_207 | 28 | 71 | 0.00000000600235 |
| Solanum pennellii | Spenn-ch01 | 5 | CH_spe_224 | 27 | 68 | 0.0000000134212 |
| Solanum pennellii | Spenn-ch12 | 5 | CH_spe_253 | 20 | 39 | 0.0000000456626 |
| Solanum pennellii | Spenn-ch11 | 5 | CH_spe_256 | 23 | 52 | 0.0000000498206 |
| Solanum pennellii | Spenn-ch01 | 5 | CH_spe_271 | 13 | 16 | 0.0000000756045 |
| Solanum pennellii | Spenn-ch09 | 5 | CH_spe_325 | 27 | 77 | 0.000000431753 |
| Solanum pennellii | Spenn-ch09 | 5 | CH_spe_333 | 27 | 78 | 0.000000611355 |
| Solanum pennellii | Spenn-ch12 | 5 | CH_spe_358 | 27 | 80 | 0.00000120174 |
| Solanum pennellii | Spenn-ch12 | 5 | CH_spe_407 | 26 | 78 | 0.00000382412 |
| Solanum pennellii | Spenn-ch04 | 5 | CH_spe_441 | 26 | 80 | 0.00000724067 |
| Solanum pennellii | Spenn-ch03 | 5 | CH_spe_455 | 18 | 40 | 0.000010054 |
| Solanum pennellii | Spenn-ch05 | 5 | CH_spe_472 | 24 | 71 | 0.0000144747 |
| Solanum pennellii | Spenn-ch09 | 5 | CH_spe_506 | 24 | 73 | 0.0000277481 |
| Solanum pennellii | Spenn-ch07 | 5 | CH_spe_684 | 23 | 74 | 0.000215923 |
| Solanum pennellii | Spenn-ch04 | 5 | CH_spe_687 | 24 | 80 | 0.000222313 |
| Solanum pennellii | Spenn-ch10 | 5 | CH_spe_754 | 22 | 70 | 0.000368115 |
| Solanum pennellii | Spenn-ch09 | 5 | CH_spe_819 | 23 | 77 | 0.000506288 |
| Solanum pennellii | Spenn-ch05 | 5 | CH_spe_832 | 22 | 72 | 0.000659376 |
| Solanum pennellii | Spenn-ch03 | 5 | CH_spe_870 | 10 | 15 | 0.000753623 |
| Cicer arietinum L. | Ca_LG7_v3 | 6 | CH_car_190 | 4 | 5 | 0.0000682832 |
| Chara braunii | BFEA01000022 | 6 | CH_cbr_120 | 30 | 55 | 0.00000346728 |
| Fragaria vesca | Fvb4 | 6 | CH_fve_401 | 7 | 34 | 0.00000122809 |
| Papaver somniferum | NC_039358.1 | 6 | CH_pso_858 | 4 | 4 | 0.0000568136 |
| Sequoiadendron giganteum | chr11 | 6 | CH_sgi_2351 | 4 | 9 | 0.000331624 |
| Sequoiadendron giganteum | HRSCAF_1 | 6 | CH_sgi_2645 | 3 | 3 | 0.000950177 |
| Sapria himalayana | scaffold38_5640129 | 6 | CH_shi_63 | 20 | 57 | 0.000000000112489 |
| Solanum lycopersicum | SL4.0ch05 | 6 | CH_sly_533 | 4 | 11 | 0.0000296217 |
| Solanum pennellii | Spenn-ch07 | 6 | CH_spe_169 | 26 | 57 | 0.000000000676576 |
| Solanum pennellii | Spenn-ch09 | 6 | CH_spe_187 | 28 | 69 | 0.00000000254551 |
| Solanum pennellii | Spenn-ch09 | 6 | CH_spe_188 | 28 | 69 | 0.00000000254551 |
| Solanum pennellii | Spenn-ch05 | 6 | CH_spe_207 | 28 | 71 | 0.00000000600235 |
| Solanum pennellii | Spenn-ch01 | 6 | CH_spe_224 | 27 | 68 | 0.0000000134212 |
| Solanum pennellii | Spenn-ch12 | 6 | CH_spe_253 | 20 | 39 | 0.0000000456626 |
| Solanum pennellii | Spenn-ch11 | 6 | CH_spe_256 | 23 | 52 | 0.0000000498206 |
| Solanum pennellii | Spenn-ch01 | 6 | CH_spe_271 | 13 | 16 | 0.0000000756045 |
| Solanum pennellii | Spenn-ch09 | 6 | CH_spe_325 | 27 | 77 | 0.000000431753 |
| Solanum pennellii | Spenn-ch09 | 6 | CH_spe_333 | 27 | 78 | 0.000000611355 |
| Solanum pennellii | Spenn-ch12 | 6 | CH_spe_358 | 27 | 80 | 0.00000120174 |
| Solanum pennellii | Spenn-ch12 | 6 | CH_spe_407 | 26 | 78 | 0.00000382412 |
| Solanum pennellii | Spenn-ch04 | 6 | CH_spe_441 | 26 | 80 | 0.00000724067 |
| Solanum pennellii | Spenn-ch03 | 6 | CH_spe_455 | 18 | 40 | 0.000010054 |
| Solanum pennellii | Spenn-ch05 | 6 | CH_spe_472 | 24 | 71 | 0.0000144747 |
| Solanum pennellii | Spenn-ch09 | 6 | CH_spe_506 | 24 | 73 | 0.0000277481 |
| Solanum pennellii | Spenn-ch07 | 6 | CH_spe_684 | 23 | 74 | 0.000215923 |
| Solanum pennellii | Spenn-ch04 | 6 | CH_spe_687 | 24 | 80 | 0.000222313 |
| Solanum pennellii | Spenn-ch10 | 6 | CH_spe_754 | 22 | 70 | 0.000368115 |
| Solanum pennellii | Spenn-ch09 | 6 | CH_spe_819 | 23 | 77 | 0.000506288 |
| Solanum pennellii | Spenn-ch05 | 6 | CH_spe_832 | 22 | 72 | 0.000659376 |
| Solanum pennellii | Spenn-ch03 | 6 | CH_spe_870 | 10 | 15 | 0.000753623 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |