Functional clusters
Information
- Type InterPro
- Description Plant lipoxygenase, PLAT/LH2 domain
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Carpinus fangiana | Cfa02 | 5 | CH_cfa_290 | 3 | 3 | 0.00000189286 |
| Carya illinoinensis | Chr13 | 5 | CH_cil_207 | 5 | 16 | 0.000000000121659 |
| Cucumis sativus L. | chr2 | 5 | CH_csa_19 | 9 | 14 | 4.78491e-24 |
| Davidia involucrata | GWHABJS00000005 | 5 | CH_din_219 | 4 | 9 | 0.0000000155925 |
| Glycine max | Gm15 | 5 | CH_gma_482 | 3 | 3 | 0.00000789627 |
| Glycine max | Gm20 | 5 | CH_gma_599 | 3 | 5 | 0.0000789013 |
| Malus domestica | Chr04 | 5 | CH_mdo_155 | 5 | 7 | 0.00000000000142224 |
| Malus domestica | Chr12 | 5 | CH_mdo_675 | 3 | 4 | 0.00000483084 |
| Olea europaea | chr4 | 5 | CH_oeu_603 | 2 | 2 | 0.000533789 |
| Petunia axillaris | Peaxi162Scf00092 | 5 | CH_pax_688 | 2 | 2 | 0.000703556 |
| Prunus persica | Pp06 | 5 | CH_ppe_150 | 5 | 6 | 0.000000000000351151 |
| Prunus persica | Pp02 | 5 | CH_ppe_522 | 3 | 6 | 0.0000200193 |
| Populus trichocarpa | Chr01 | 5 | CH_ptr_454 | 3 | 4 | 0.00000573166 |
| Phaseolus vulgaris | Chr05 | 5 | CH_pvu_174 | 4 | 4 | 0.0000000028322 |
| Salix brachista | GWHAAZH00000001 | 5 | CH_sbr_280 | 3 | 3 | 0.000000500331 |
| Solanum pennellii | Spenn-ch01 | 5 | CH_spe_391 | 3 | 4 | 0.00000261108 |
| Vigna mungo | CM024079.1 | 5 | CH_vmu_57 | 5 | 6 | 0.0000000000048529 |
| Carpinus fangiana | Cfa02 | 6 | CH_cfa_290 | 3 | 3 | 0.00000189286 |
| Carya illinoinensis | Chr13 | 6 | CH_cil_207 | 5 | 16 | 0.000000000121659 |
| Cucumis sativus L. | chr2 | 6 | CH_csa_19 | 9 | 14 | 4.78491e-24 |
| Davidia involucrata | GWHABJS00000005 | 6 | CH_din_219 | 4 | 9 | 0.0000000155925 |
| Glycine max | Gm15 | 6 | CH_gma_482 | 3 | 3 | 0.00000789627 |
| Glycine max | Gm20 | 6 | CH_gma_599 | 3 | 5 | 0.0000789013 |
| Malus domestica | Chr04 | 6 | CH_mdo_155 | 5 | 7 | 0.00000000000142224 |
| Malus domestica | Chr12 | 6 | CH_mdo_675 | 3 | 4 | 0.00000483084 |
| Olea europaea | chr4 | 6 | CH_oeu_603 | 2 | 2 | 0.000533789 |
| Petunia axillaris | Peaxi162Scf00092 | 6 | CH_pax_688 | 2 | 2 | 0.000703556 |
| Prunus persica | Pp06 | 6 | CH_ppe_150 | 5 | 6 | 0.000000000000351151 |
| Prunus persica | Pp02 | 6 | CH_ppe_522 | 3 | 6 | 0.0000200193 |
| Populus trichocarpa | Chr01 | 6 | CH_ptr_454 | 3 | 4 | 0.00000573166 |
| Phaseolus vulgaris | Chr05 | 6 | CH_pvu_174 | 4 | 4 | 0.0000000028322 |
| Salix brachista | GWHAAZH00000001 | 6 | CH_sbr_280 | 3 | 3 | 0.000000500331 |
| Solanum pennellii | Spenn-ch01 | 6 | CH_spe_391 | 3 | 4 | 0.00000261108 |
| Vigna mungo | CM024079.1 | 6 | CH_vmu_57 | 5 | 6 | 0.0000000000048529 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |