Functional clusters

Information

  • Type InterPro
  • Description LNK family

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Actinidia chinensis Lachesis_group26 5 CH_ach_626 2 2 0.000814819
Amaranthus hybridus AmaHy_arrow1_Scaffold_12 5 CH_amhyb_477 2 2 0.000841751
Brassica carinata ChrC07 5 CH_bca_709 3 3 0.000000664186
Populus trichocarpa scaffold_67 5 CH_ptr_267 4 9 0.0000000153169
Quercus lobata 4 5 CH_qlo_1799 2 2 0.000774433
Quercus lobata 7 5 CH_qlo_1800 2 2 0.000774433
Sequoiadendron giganteum chr3 5 CH_sgi_2480 2 2 0.000487151
Sequoiadendron giganteum chr1 5 CH_sgi_2481 2 2 0.000487151
Solanum lycopersicum SL4.0ch01 5 CH_sly_824 2 2 0.000352164
Vanilla planifolia CM028154.1 5 CH_vpl_491 3 25 0.000187975
Vitis vinifera chr12 5 CH_vvi_708 2 2 0.000456378
Actinidia chinensis Lachesis_group26 6 CH_ach_626 2 2 0.000814819
Amaranthus hybridus AmaHy_arrow1_Scaffold_12 6 CH_amhyb_477 2 2 0.000841751
Brassica carinata ChrC07 6 CH_bca_709 3 3 0.000000664186
Populus trichocarpa scaffold_67 6 CH_ptr_267 4 9 0.0000000153169
Quercus lobata 4 6 CH_qlo_1799 2 2 0.000774433
Quercus lobata 7 6 CH_qlo_1800 2 2 0.000774433
Sequoiadendron giganteum chr3 6 CH_sgi_2480 2 2 0.000487151
Sequoiadendron giganteum chr1 6 CH_sgi_2481 2 2 0.000487151
Solanum lycopersicum SL4.0ch01 6 CH_sly_824 2 2 0.000352164
Vanilla planifolia CM028154.1 6 CH_vpl_491 3 25 0.000187975
Vitis vinifera chr12 6 CH_vvi_708 2 2 0.000456378

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001