Functional clusters
Information
- Type InterPro
- Description Protein egg apparatus-1
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aquilegia oxysepala | CHR03 | 5 | CH_aox_440 | 2 | 2 | 0.000240597 |
| Brassica carinata | ChrC09 | 5 | CH_bca_589 | 3 | 3 | 0.000000196034 |
| Brassica napus | C04 | 5 | CH_bna_1001 | 3 | 8 | 0.0000585315 |
| Brassica napus | C01 | 5 | CH_bna_126 | 5 | 6 | 0.000000000000227021 |
| Brassica napus | A01 | 5 | CH_bna_216 | 4 | 4 | 0.00000000020387 |
| Brassica oleracea | C1 | 5 | CH_bol_50 | 5 | 6 | 0.0000000000000129442 |
| Brassica rapa | A01 | 5 | CH_bra_67 | 4 | 4 | 0.0000000000299119 |
| Camellia sinensis var. sinensis | Chr6 | 5 | CH_camsi_560 | 3 | 5 | 0.00000031537 |
| Corylus avellana | 2 | 5 | CH_cav_655 | 2 | 2 | 0.000230008 |
| Coffea canephora | chr11 | 5 | CH_ccan_130 | 3 | 7 | 0.00000000952242 |
| Carpinus fangiana | Cfa02 | 5 | CH_cfa_305 | 3 | 5 | 0.00000301046 |
| Cardamine hirsuta | Chr8 | 5 | CH_chi_643 | 2 | 2 | 0.000207361 |
| Carya illinoinensis | Chr06 | 5 | CH_cil_265 | 3 | 3 | 0.00000000576299 |
| Daucus carota | DCARv2_Chr7 | 5 | CH_dca_550 | 2 | 2 | 0.000191333 |
| Davidia involucrata | GWHABJS00000008 | 5 | CH_din_295 | 3 | 5 | 0.000000750272 |
| Eucalyptus grandis | Chr08 | 5 | CH_egr_647 | 3 | 3 | 0.0000000205534 |
| Fragaria vesca | Fvb4 | 5 | CH_fve_302 | 3 | 5 | 0.0000000520546 |
| Hydrangea macrophylla | Hma1.2p1_0473F.1 | 5 | CH_hma_617 | 2 | 4 | 0.000666445 |
| Lotus japonicus | chr5 | 5 | CH_lja_142 | 3 | 4 | 0.0000000306801 |
| Lonicera japonica | GWHAAZE00000006 | 5 | CH_lonja_353 | 3 | 3 | 0.00000000537991 |
| Lactuca sativa | Lsat_1_v8_lg_4 | 5 | CH_lsa_290 | 3 | 3 | 0.0000000158526 |
| Medicago truncatula | chr3 | 5 | CH_mtr_293 | 4 | 4 | 0.0000000000262187 |
| Nicotiana tabacum | Nitab4.5_0000027 | 5 | CH_nta_226 | 2 | 2 | 0.000109727 |
| Oryza sativa ssp. japonica | chr12 | 5 | CH_osa_305 | 3 | 3 | 0.000000690329 |
| Oryza sativa ssp. japonica | chr01 | 5 | CH_osa_351 | 3 | 4 | 0.00000276081 |
| Oryza sativa ssp. japonica | chr07 | 5 | CH_osa_385 | 3 | 5 | 0.00000690074 |
| Populus trichocarpa | Chr19 | 5 | CH_ptr_74 | 7 | 12 | 1.8413e-18 |
| Rhododendron simsii | chr09 | 5 | CH_rsi_153 | 5 | 10 | 0.0000000000000327749 |
| Solanum tuberosum | ST4.03ch05 | 5 | CH_stu_438 | 3 | 8 | 0.00000220525 |
| Zea mays | 7 | 5 | CH_zma_194 | 3 | 3 | 0.000000329424 |
| Aquilegia oxysepala | CHR03 | 6 | CH_aox_440 | 2 | 2 | 0.000240597 |
| Brassica carinata | ChrC09 | 6 | CH_bca_589 | 3 | 3 | 0.000000196034 |
| Brassica napus | C04 | 6 | CH_bna_1001 | 3 | 8 | 0.0000585315 |
| Brassica napus | C01 | 6 | CH_bna_126 | 5 | 6 | 0.000000000000227021 |
| Brassica napus | A01 | 6 | CH_bna_216 | 4 | 4 | 0.00000000020387 |
| Brassica oleracea | C1 | 6 | CH_bol_50 | 5 | 6 | 0.0000000000000129442 |
| Brassica rapa | A01 | 6 | CH_bra_67 | 4 | 4 | 0.0000000000299119 |
| Camellia sinensis var. sinensis | Chr6 | 6 | CH_camsi_560 | 3 | 5 | 0.00000031537 |
| Corylus avellana | 2 | 6 | CH_cav_655 | 2 | 2 | 0.000230008 |
| Coffea canephora | chr11 | 6 | CH_ccan_130 | 3 | 7 | 0.00000000952242 |
| Carpinus fangiana | Cfa02 | 6 | CH_cfa_305 | 3 | 5 | 0.00000301046 |
| Cardamine hirsuta | Chr8 | 6 | CH_chi_643 | 2 | 2 | 0.000207361 |
| Carya illinoinensis | Chr06 | 6 | CH_cil_265 | 3 | 3 | 0.00000000576299 |
| Cucumis melo | chr10 | 6 | CH_cme_315 | 2 | 2 | 0.0000667111 |
| Daucus carota | DCARv2_Chr7 | 6 | CH_dca_550 | 2 | 2 | 0.000191333 |
| Davidia involucrata | GWHABJS00000008 | 6 | CH_din_295 | 3 | 5 | 0.000000750272 |
| Eucalyptus grandis | Chr08 | 6 | CH_egr_647 | 3 | 3 | 0.0000000205534 |
| Fragaria x ananassa | Fvb4-2 | 6 | CH_fan_1023 | 2 | 2 | 0.000388576 |
| Fragaria x ananassa | Fvb4-1 | 6 | CH_fan_1024 | 2 | 2 | 0.000388576 |
| Fragaria vesca | Fvb4 | 6 | CH_fve_302 | 3 | 5 | 0.0000000520546 |
| Hydrangea macrophylla | Hma1.2p1_0473F.1 | 6 | CH_hma_617 | 2 | 4 | 0.000666445 |
| Lotus japonicus | chr5 | 6 | CH_lja_142 | 3 | 4 | 0.0000000306801 |
| Lonicera japonica | GWHAAZE00000006 | 6 | CH_lonja_353 | 3 | 3 | 0.00000000537991 |
| Lactuca sativa | Lsat_1_v8_lg_4 | 6 | CH_lsa_290 | 3 | 3 | 0.0000000158526 |
| Medicago truncatula | chr3 | 6 | CH_mtr_293 | 4 | 4 | 0.0000000000262187 |
| Nicotiana tabacum | Nitab4.5_0000027 | 6 | CH_nta_226 | 2 | 2 | 0.000109727 |
| Oryza sativa ssp. japonica | chr12 | 6 | CH_osa_305 | 3 | 3 | 0.000000690329 |
| Oryza sativa ssp. japonica | chr01 | 6 | CH_osa_351 | 3 | 4 | 0.00000276081 |
| Oryza sativa ssp. japonica | chr07 | 6 | CH_osa_385 | 3 | 5 | 0.00000690074 |
| Populus trichocarpa | Chr19 | 6 | CH_ptr_74 | 7 | 12 | 1.8413e-18 |
| Rhododendron simsii | chr09 | 6 | CH_rsi_153 | 5 | 10 | 0.0000000000000327749 |
| Solanum tuberosum | ST4.03ch05 | 6 | CH_stu_438 | 3 | 8 | 0.00000220525 |
| Zea mays | 7 | 6 | CH_zma_194 | 3 | 3 | 0.000000329424 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |