Functional clusters
Information
- Type InterPro
- Description tRNA pseudouridine synthase Pus10-like
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Brassica carinata | ChrB03 | 5 | CH_bca_1598 | 2 | 2 | 0.000213764 |
| Brassica napus | A07 | 5 | CH_bna_659 | 3 | 12 | 0.00000227334 |
| Beta vulgaris | Chr1_EL10_PGA_scaffold3 | 5 | CH_bvu_361 | 2 | 2 | 0.0000827917 |
| Carica papaya | supercontig_26 | 5 | CH_cpa_104 | 3 | 3 | 0.000000013557 |
| Hydrangea macrophylla | Hma1.2p1_1100F.1 | 5 | CH_hma_160 | 3 | 6 | 0.000000370165 |
| Sequoiadendron giganteum | chr8 | 5 | CH_sgi_1848 | 2 | 2 | 0.0000487151 |
| Sapria himalayana | scaffold6_19132642 | 5 | CH_shi_96 | 3 | 3 | 0.00000000490454 |
| Brassica carinata | ChrB03 | 6 | CH_bca_1598 | 2 | 2 | 0.000213764 |
| Brassica napus | A07 | 6 | CH_bna_659 | 3 | 12 | 0.00000227334 |
| Beta vulgaris | Chr1_EL10_PGA_scaffold3 | 6 | CH_bvu_361 | 2 | 2 | 0.0000827917 |
| Carica papaya | supercontig_26 | 6 | CH_cpa_104 | 3 | 3 | 0.000000013557 |
| Hydrangea macrophylla | Hma1.2p1_1100F.1 | 6 | CH_hma_160 | 3 | 6 | 0.000000370165 |
| Sequoiadendron giganteum | chr8 | 6 | CH_sgi_1848 | 2 | 2 | 0.0000487151 |
| Sapria himalayana | scaffold6_19132642 | 6 | CH_shi_96 | 3 | 3 | 0.00000000490454 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |