Functional clusters

Information

  • Type InterPro
  • Description Programmed cell death protein 4

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Amaranthus hybridus AmaHy_arrow1_Scaffold_16 5 CH_amhyb_163 4 59 0.00000405524
Amborella trichopoda AmTr_v1.0_scaffold00078 5 CH_atr_612 2 3 0.000714919
Brassica carinata ChrC06 5 CH_bca_192 4 4 0.0000000000145059
Brassica napus A05 5 CH_bna_431 4 14 0.0000000743494
Brassica oleracea C7 5 CH_bol_899 2 2 0.000915212
Camellia sinensis var. sinensis Chr2 5 CH_camsi_1478 2 4 0.000825322
Capsicum annuum PGAv.1.6.scaffold472 5 CH_can_719 2 2 0.000247831
Cardamine hirsuta Chr8 5 CH_chi_797 2 2 0.000691204
Fragaria vesca Fvb5 5 CH_fve_433 3 11 0.00000343439
Malus domestica Chr10 5 CH_mdo_1253 2 2 0.000379212
Rosa chinensis RcHm_v2.0_Chr7 5 CH_rch_273 5 16 0.00000000000463051
Simmondsia chinensis GWHAASQ00000022 5 CH_sci_468 2 2 0.000510856
Sequoiadendron giganteum chr5 5 CH_sgi_1845 2 2 0.0000487151
Solanum lycopersicum SL4.0ch03 5 CH_sly_740 2 2 0.000176082
Solanum pennellii Spenn-ch03 5 CH_spe_662 2 2 0.000133437
Trochodendron aralioides group11 5 CH_tar_800 2 2 0.00036022
Trifolium pratense Tp57577_TGAC_v2_LG5 5 CH_tpr_624 2 2 0.000227092
Utricularia gibba unitig_21 5 CH_ugi_279 2 2 0.000246144
Vanilla planifolia CM028161.1 5 CH_vpl_548 2 2 0.000221664
Amaranthus hybridus AmaHy_arrow1_Scaffold_16 6 CH_amhyb_163 4 59 0.00000405524
Amborella trichopoda AmTr_v1.0_scaffold00078 6 CH_atr_612 2 3 0.000714919
Brassica carinata ChrC06 6 CH_bca_192 4 4 0.0000000000145059
Brassica napus A05 6 CH_bna_431 4 14 0.0000000743494
Brassica oleracea C7 6 CH_bol_899 2 2 0.000915212
Camellia sinensis var. sinensis Chr2 6 CH_camsi_1478 2 4 0.000825322
Capsicum annuum PGAv.1.6.scaffold472 6 CH_can_719 2 2 0.000247831
Cardamine hirsuta Chr8 6 CH_chi_797 2 2 0.000691204
Fragaria x ananassa Fvb5-2 6 CH_fan_537 3 8 0.00000345026
Fragaria vesca Fvb5 6 CH_fve_433 3 11 0.00000343439
Malus domestica Chr10 6 CH_mdo_1253 2 2 0.000379212
Rosa chinensis RcHm_v2.0_Chr7 6 CH_rch_273 5 16 0.00000000000463051
Simmondsia chinensis GWHAASQ00000022 6 CH_sci_468 2 2 0.000510856
Sequoiadendron giganteum chr5 6 CH_sgi_1845 2 2 0.0000487151
Solanum lycopersicum SL4.0ch03 6 CH_sly_740 2 2 0.000176082
Solanum pennellii Spenn-ch03 6 CH_spe_662 2 2 0.000133437
Trochodendron aralioides group11 6 CH_tar_800 2 2 0.00036022
Trifolium pratense Tp57577_TGAC_v2_LG5 6 CH_tpr_624 2 2 0.000227092
Utricularia gibba unitig_21 6 CH_ugi_279 2 2 0.000246144
Vanilla planifolia CM028161.1 6 CH_vpl_548 2 2 0.000221664

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001