Functional clusters
Information
- Type InterPro
- Description Programmed cell death protein 4
Cluster overview
Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
---|---|---|---|---|---|---|
Amaranthus hybridus | AmaHy_arrow1_Scaffold_16 | 5 | CH_amhyb_163 | 4 | 59 | 0.00000405524 |
Amborella trichopoda | AmTr_v1.0_scaffold00078 | 5 | CH_atr_612 | 2 | 3 | 0.000714919 |
Brassica carinata | ChrC06 | 5 | CH_bca_192 | 4 | 4 | 0.0000000000145059 |
Brassica napus | A05 | 5 | CH_bna_431 | 4 | 14 | 0.0000000743494 |
Brassica oleracea | C7 | 5 | CH_bol_899 | 2 | 2 | 0.000915212 |
Camellia sinensis var. sinensis | Chr2 | 5 | CH_camsi_1478 | 2 | 4 | 0.000825322 |
Capsicum annuum | PGAv.1.6.scaffold472 | 5 | CH_can_719 | 2 | 2 | 0.000247831 |
Cardamine hirsuta | Chr8 | 5 | CH_chi_797 | 2 | 2 | 0.000691204 |
Fragaria vesca | Fvb5 | 5 | CH_fve_433 | 3 | 11 | 0.00000343439 |
Malus domestica | Chr10 | 5 | CH_mdo_1253 | 2 | 2 | 0.000379212 |
Rosa chinensis | RcHm_v2.0_Chr7 | 5 | CH_rch_273 | 5 | 16 | 0.00000000000463051 |
Simmondsia chinensis | GWHAASQ00000022 | 5 | CH_sci_468 | 2 | 2 | 0.000510856 |
Sequoiadendron giganteum | chr5 | 5 | CH_sgi_1845 | 2 | 2 | 0.0000487151 |
Solanum lycopersicum | SL4.0ch03 | 5 | CH_sly_740 | 2 | 2 | 0.000176082 |
Solanum pennellii | Spenn-ch03 | 5 | CH_spe_662 | 2 | 2 | 0.000133437 |
Trochodendron aralioides | group11 | 5 | CH_tar_800 | 2 | 2 | 0.00036022 |
Trifolium pratense | Tp57577_TGAC_v2_LG5 | 5 | CH_tpr_624 | 2 | 2 | 0.000227092 |
Utricularia gibba | unitig_21 | 5 | CH_ugi_279 | 2 | 2 | 0.000246144 |
Vanilla planifolia | CM028161.1 | 5 | CH_vpl_548 | 2 | 2 | 0.000221664 |
Amaranthus hybridus | AmaHy_arrow1_Scaffold_16 | 6 | CH_amhyb_163 | 4 | 59 | 0.00000405524 |
Amborella trichopoda | AmTr_v1.0_scaffold00078 | 6 | CH_atr_612 | 2 | 3 | 0.000714919 |
Brassica carinata | ChrC06 | 6 | CH_bca_192 | 4 | 4 | 0.0000000000145059 |
Brassica napus | A05 | 6 | CH_bna_431 | 4 | 14 | 0.0000000743494 |
Brassica oleracea | C7 | 6 | CH_bol_899 | 2 | 2 | 0.000915212 |
Camellia sinensis var. sinensis | Chr2 | 6 | CH_camsi_1478 | 2 | 4 | 0.000825322 |
Capsicum annuum | PGAv.1.6.scaffold472 | 6 | CH_can_719 | 2 | 2 | 0.000247831 |
Cardamine hirsuta | Chr8 | 6 | CH_chi_797 | 2 | 2 | 0.000691204 |
Fragaria x ananassa | Fvb5-2 | 6 | CH_fan_537 | 3 | 8 | 0.00000345026 |
Fragaria vesca | Fvb5 | 6 | CH_fve_433 | 3 | 11 | 0.00000343439 |
Malus domestica | Chr10 | 6 | CH_mdo_1253 | 2 | 2 | 0.000379212 |
Rosa chinensis | RcHm_v2.0_Chr7 | 6 | CH_rch_273 | 5 | 16 | 0.00000000000463051 |
Simmondsia chinensis | GWHAASQ00000022 | 6 | CH_sci_468 | 2 | 2 | 0.000510856 |
Sequoiadendron giganteum | chr5 | 6 | CH_sgi_1845 | 2 | 2 | 0.0000487151 |
Solanum lycopersicum | SL4.0ch03 | 6 | CH_sly_740 | 2 | 2 | 0.000176082 |
Solanum pennellii | Spenn-ch03 | 6 | CH_spe_662 | 2 | 2 | 0.000133437 |
Trochodendron aralioides | group11 | 6 | CH_tar_800 | 2 | 2 | 0.00036022 |
Trifolium pratense | Tp57577_TGAC_v2_LG5 | 6 | CH_tpr_624 | 2 | 2 | 0.000227092 |
Utricularia gibba | unitig_21 | 6 | CH_ugi_279 | 2 | 2 | 0.000246144 |
Vanilla planifolia | CM028161.1 | 6 | CH_vpl_548 | 2 | 2 | 0.000221664 |
Functional Clusters Experiments
Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
---|---|---|---|---|---|---|---|
1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |