Functional clusters

Information

  • Type InterPro
  • Description Nonsense-mediated mRNA decay protein Nmd2/UPF2

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr12 5 CH_acertr_786 2 2 0.000211491
Brassica carinata ChrC02 5 CH_bca_446 3 3 0.0000000239902
Carica papaya supercontig_1 5 CH_cpa_548 2 4 0.000570342
Nicotiana tabacum Nitab4.5_0000061 5 CH_nta_224 2 2 0.000109727
Olea europaea chr1 5 CH_oeu_149 3 5 0.000000170947
Oryza sativa ssp. japonica chr04 5 CH_osa_658 2 2 0.000316874
Oryza sativa ssp. japonica chr02 5 CH_osa_659 2 2 0.000316874
Pisum sativum chr4LG4 5 CH_psa_660 2 3 0.000469451
Rhododendron simsii chr03 5 CH_rsi_817 2 2 0.000193592
Sequoiadendron giganteum chr2 5 CH_sgi_208 6 6 4.32221e-20
Vanilla planifolia CM028157.1 5 CH_vpl_434 2 2 0.000073888
Acer truncatum chr12 6 CH_acertr_786 2 2 0.000211491
Brassica carinata ChrC02 6 CH_bca_446 3 3 0.0000000239902
Carica papaya supercontig_1 6 CH_cpa_548 2 4 0.000570342
Nicotiana tabacum Nitab4.5_0000061 6 CH_nta_224 2 2 0.000109727
Olea europaea chr1 6 CH_oeu_149 3 5 0.000000170947
Oryza sativa ssp. japonica chr04 6 CH_osa_658 2 2 0.000316874
Oryza sativa ssp. japonica chr02 6 CH_osa_659 2 2 0.000316874
Pisum sativum chr4LG4 6 CH_psa_660 2 3 0.000469451
Rhododendron simsii chr03 6 CH_rsi_817 2 2 0.000193592
Sequoiadendron giganteum chr2 6 CH_sgi_208 6 6 4.32221e-20
Vanilla planifolia CM028157.1 6 CH_vpl_434 2 2 0.000073888

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001