Functional clusters
Information
- Type InterPro
- Description CCR4-NOT transcription complex subunit 7/8/Pop2
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr8 | 5 | CH_acertr_205 | 5 | 33 | 0.0000000110251 |
| Arabidopsis lyrata | scaffold_5 | 5 | CH_aly_356 | 3 | 5 | 0.00000548748 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.13 | 5 | CH_arhy_329 | 4 | 4 | 0.000000000146519 |
| Amborella trichopoda | AmTr_v1.0_scaffold00070 | 5 | CH_atr_228 | 3 | 3 | 0.000000331332 |
| Brassica carinata | ChrB02 | 5 | CH_bca_1098 | 3 | 4 | 0.0000149552 |
| Brassica carinata | ChrB02 | 5 | CH_bca_1541 | 3 | 8 | 0.000209162 |
| Brassica carinata | ChrC01 | 5 | CH_bca_921 | 3 | 3 | 0.00000373973 |
| Brassica carinata | ChrC05 | 5 | CH_bca_922 | 3 | 3 | 0.00000373973 |
| Brassica carinata | ChrB03 | 5 | CH_bca_923 | 3 | 3 | 0.00000373973 |
| Brassica rapa | A05 | 5 | CH_bra_213 | 3 | 3 | 0.00000125794 |
| Camellia sinensis var. sinensis | Chr13 | 5 | CH_camsi_256 | 4 | 4 | 0.0000000000607467 |
| Cannabis sativa | NC_044375.1 | 5 | CH_cansat_271 | 4 | 36 | 0.00000174509 |
| Corylus avellana | 1 | 5 | CH_cav_560 | 3 | 7 | 0.0000881497 |
| Carpinus fangiana | Cfa04 | 5 | CH_cfa_189 | 5 | 24 | 0.0000000208725 |
| Capsella rubella | scaffold_5 | 5 | CH_cru_305 | 3 | 3 | 0.00000132315 |
| Durio zibethinus | NW_019168048.1 | 5 | CH_dzi_369 | 3 | 7 | 0.0000410182 |
| Eucalyptus grandis | Chr03 | 5 | CH_egr_1027 | 4 | 56 | 0.0000459866 |
| Erythranthe guttata | scaffold_14 | 5 | CH_egut_225 | 4 | 5 | 0.00000000790265 |
| Gossypium hirsutum | D04 | 5 | CH_ghi_772 | 3 | 4 | 0.0000360752 |
| Gossypium raimondii | Chr12 | 5 | CH_gra_385 | 3 | 4 | 0.0000196522 |
| Helianthus annuus | HanXRQChr04 | 5 | CH_han_116 | 8 | 39 | 0.00000000000000280364 |
| Lupinus albus | Lalb_Chr12 | 5 | CH_lal_215 | 4 | 12 | 0.000000292443 |
| Lupinus albus | Lalb_Chr06 | 5 | CH_lal_333 | 3 | 4 | 0.00000751775 |
| Magnolia biondii | Chr15 | 5 | CH_mbi_527 | 3 | 5 | 0.00000123809 |
| Prunus persica | Pp06 | 5 | CH_ppe_565 | 3 | 7 | 0.0000641992 |
| Pisum sativum | chr7LG7 | 5 | CH_psa_45 | 7 | 16 | 6.22109e-17 |
| Phaseolus vulgaris | Chr04 | 5 | CH_pvu_126 | 5 | 5 | 0.0000000000371434 |
| Phaseolus vulgaris | Chr02 | 5 | CH_pvu_20 | 13 | 16 | 4.34735e-33 |
| Phaseolus vulgaris | Chr02 | 5 | CH_pvu_53 | 8 | 9 | 2.58484e-19 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 5 | CH_rch_562 | 4 | 11 | 0.0000000855034 |
| Salix brachista | GWHAAZH00000018 | 5 | CH_sbr_188 | 4 | 4 | 0.000000004493 |
| Sechium edule | LG11 | 5 | CH_sed_227 | 3 | 3 | 0.00000277906 |
| Solanum pennellii | Spenn-ch01 | 5 | CH_spe_310 | 3 | 3 | 0.000000249282 |
| Solanum tuberosum | ST4.03ch01 | 5 | CH_stu_195 | 4 | 4 | 0.0000000000847881 |
| Trochodendron aralioides | group18 | 5 | CH_tar_401 | 3 | 3 | 0.0000061637 |
| Trochodendron aralioides | group2 | 5 | CH_tar_83 | 5 | 5 | 0.00000000000151094 |
| Theobroma cacao | Chromosome_6 | 5 | CH_tca_398 | 3 | 4 | 0.00000270296 |
| Zea mays | 4 | 5 | CH_zma_100 | 5 | 7 | 0.000000000805597 |
| Zea mays | 2 | 5 | CH_zma_29 | 9 | 22 | 1.14351e-17 |
| Zea mays | 9 | 5 | CH_zma_6 | 13 | 18 | 7.31611e-32 |
| Acer truncatum | chr8 | 6 | CH_acertr_205 | 5 | 33 | 0.0000000110251 |
| Arabidopsis lyrata | scaffold_5 | 6 | CH_aly_356 | 3 | 5 | 0.00000548748 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.13 | 6 | CH_arhy_329 | 4 | 4 | 0.000000000146519 |
| Amborella trichopoda | AmTr_v1.0_scaffold00070 | 6 | CH_atr_228 | 3 | 3 | 0.000000331332 |
| Brassica carinata | ChrB02 | 6 | CH_bca_1098 | 3 | 4 | 0.0000149552 |
| Brassica carinata | ChrB02 | 6 | CH_bca_1541 | 3 | 8 | 0.000209162 |
| Brassica carinata | ChrC01 | 6 | CH_bca_921 | 3 | 3 | 0.00000373973 |
| Brassica carinata | ChrC05 | 6 | CH_bca_922 | 3 | 3 | 0.00000373973 |
| Brassica carinata | ChrB03 | 6 | CH_bca_923 | 3 | 3 | 0.00000373973 |
| Brassica rapa | A05 | 6 | CH_bra_213 | 3 | 3 | 0.00000125794 |
| Camellia sinensis var. sinensis | Chr13 | 6 | CH_camsi_256 | 4 | 4 | 0.0000000000607467 |
| Cannabis sativa | NC_044375.1 | 6 | CH_cansat_271 | 4 | 36 | 0.00000174509 |
| Corylus avellana | 1 | 6 | CH_cav_560 | 3 | 7 | 0.0000881497 |
| Carpinus fangiana | Cfa04 | 6 | CH_cfa_189 | 5 | 24 | 0.0000000208725 |
| Cucumis melo | chr06 | 6 | CH_cme_195 | 3 | 3 | 0.000000801094 |
| Capsella rubella | scaffold_5 | 6 | CH_cru_305 | 3 | 3 | 0.00000132315 |
| Durio zibethinus | NW_019168048.1 | 6 | CH_dzi_369 | 3 | 7 | 0.0000410182 |
| Eucalyptus grandis | Chr03 | 6 | CH_egr_1027 | 4 | 56 | 0.0000459866 |
| Erythranthe guttata | scaffold_14 | 6 | CH_egut_225 | 4 | 5 | 0.00000000790265 |
| Gossypium hirsutum | D04 | 6 | CH_ghi_772 | 3 | 4 | 0.0000360752 |
| Gossypium raimondii | Chr12 | 6 | CH_gra_385 | 3 | 4 | 0.0000196522 |
| Helianthus annuus | HanXRQChr04 | 6 | CH_han_116 | 8 | 39 | 0.00000000000000280364 |
| Lupinus albus | Lalb_Chr12 | 6 | CH_lal_215 | 4 | 12 | 0.000000292443 |
| Lupinus albus | Lalb_Chr06 | 6 | CH_lal_333 | 3 | 4 | 0.00000751775 |
| Magnolia biondii | Chr15 | 6 | CH_mbi_527 | 3 | 5 | 0.00000123809 |
| Prunus persica | Pp06 | 6 | CH_ppe_565 | 3 | 7 | 0.0000641992 |
| Pisum sativum | chr7LG7 | 6 | CH_psa_45 | 7 | 16 | 6.22109e-17 |
| Phaseolus vulgaris | Chr04 | 6 | CH_pvu_126 | 5 | 5 | 0.0000000000371434 |
| Phaseolus vulgaris | Chr02 | 6 | CH_pvu_20 | 13 | 16 | 4.34735e-33 |
| Phaseolus vulgaris | Chr02 | 6 | CH_pvu_53 | 8 | 9 | 2.58484e-19 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 6 | CH_rch_562 | 4 | 11 | 0.0000000855034 |
| Salix brachista | GWHAAZH00000018 | 6 | CH_sbr_188 | 4 | 4 | 0.000000004493 |
| Sechium edule | LG11 | 6 | CH_sed_227 | 3 | 3 | 0.00000277906 |
| Solanum pennellii | Spenn-ch01 | 6 | CH_spe_310 | 3 | 3 | 0.000000249282 |
| Solanum tuberosum | ST4.03ch01 | 6 | CH_stu_195 | 4 | 4 | 0.0000000000847881 |
| Trochodendron aralioides | group18 | 6 | CH_tar_401 | 3 | 3 | 0.0000061637 |
| Trochodendron aralioides | group2 | 6 | CH_tar_83 | 5 | 5 | 0.00000000000151094 |
| Theobroma cacao | Chromosome_6 | 6 | CH_tca_398 | 3 | 4 | 0.00000270296 |
| Zea mays | 4 | 6 | CH_zma_100 | 5 | 7 | 0.000000000805597 |
| Zea mays | 2 | 6 | CH_zma_29 | 9 | 22 | 1.14351e-17 |
| Zea mays | 9 | 6 | CH_zma_6 | 13 | 18 | 7.31611e-32 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |