Functional clusters
Information
- Type InterPro
- Description Acyl-coenzyme A thioesterase 13
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Anthoceros agrestis | Sc2ySwM_362 | 5 | CH_aag_212 | 2 | 2 | 0.0000802568 |
| Acer truncatum | chr5 | 5 | CH_acertr_153 | 4 | 5 | 0.00000000110352 |
| Acer truncatum | chr5 | 5 | CH_acertr_62 | 5 | 5 | 0.0000000000000466913 |
| Avicennia marina | ScioBoG_94932_HRSCAF_95134 | 5 | CH_ama_203 | 2 | 2 | 0.000517331 |
| Camellia sinensis var. sinensis | Chr11 | 5 | CH_camsi_604 | 3 | 6 | 0.000000630703 |
| Cannabis sativa | NC_044375.1 | 5 | CH_cansat_585 | 2 | 2 | 0.000656642 |
| Corylus avellana | 11 | 5 | CH_cav_740 | 2 | 2 | 0.000460017 |
| Carpinus fangiana | Cfa01 | 5 | CH_cfa_240 | 3 | 3 | 0.000000172079 |
| Corchorus olitorius | AWUE01020729.1 | 5 | CH_col_24 | 5 | 6 | 0.00000000000196674 |
| Carica papaya | supercontig_9 | 5 | CH_cpa_591 | 2 | 2 | 0.000570396 |
| Davidia involucrata | GWHABJS00000020 | 5 | CH_din_757 | 2 | 2 | 0.000500125 |
| Erigeron canadensis | Conyza_canadensis_scaffold:3 | 5 | CH_eca_828 | 2 | 2 | 0.000673083 |
| Fragaria vesca | Fvb3 | 5 | CH_fve_37 | 8 | 15 | 2.46977e-21 |
| Gossypium hirsutum | A09 | 5 | CH_ghi_248 | 5 | 7 | 0.0000000000135963 |
| Gossypium hirsutum | D09 | 5 | CH_ghi_662 | 3 | 3 | 0.00000480729 |
| Gossypium raimondii | Chr06 | 5 | CH_gra_318 | 3 | 3 | 0.00000196163 |
| Hydrangea macrophylla | Hma1.2p1_0227F.1 | 5 | CH_hma_166 | 3 | 3 | 0.000000370226 |
| Lotus japonicus | chr3 | 5 | CH_lja_210 | 3 | 3 | 0.000000268461 |
| Lactuca sativa | Lsat_1_v8_lg_9 | 5 | CH_lsa_876 | 2 | 2 | 0.00077101 |
| Magnolia biondii | Chr04 | 5 | CH_mbi_1274 | 2 | 3 | 0.00087414 |
| Malus domestica | Chr11 | 5 | CH_mdo_110 | 5 | 5 | 0.0000000000000199625 |
| Manihot esculenta | Chromosome05 | 5 | CH_mes_178 | 4 | 4 | 0.0000000000478185 |
| Medicago truncatula | chr3 | 5 | CH_mtr_69 | 7 | 7 | 4.54725e-23 |
| Nicotiana tabacum | Nitab4.5_0000744 | 5 | CH_nta_220 | 2 | 2 | 0.000109727 |
| Petunia axillaris | Peaxi162Scf00021 | 5 | CH_pax_234 | 3 | 3 | 0.000000415808 |
| Petunia axillaris | Peaxi162Scf01058 | 5 | CH_pax_235 | 3 | 3 | 0.000000415808 |
| Prunus persica | Pp06 | 5 | CH_ppe_99 | 6 | 6 | 4.80398e-17 |
| Pisum sativum | chr4LG4 | 5 | CH_psa_252 | 3 | 4 | 0.000000326504 |
| Pisum sativum | chr5LG3 | 5 | CH_psa_745 | 2 | 2 | 0.000782452 |
| Papaver somniferum | NW_020627707.1 | 5 | CH_pso_585 | 4 | 28 | 0.00000127478 |
| Papaver somniferum | NC_039365.1 | 5 | CH_pso_918 | 3 | 12 | 0.0000936983 |
| Quercus lobata | 8 | 5 | CH_qlo_335 | 5 | 5 | 0.0000000000000685928 |
| Quercus lobata | 1 | 5 | CH_qlo_540 | 4 | 4 | 0.000000000295216 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 5 | CH_rch_85 | 7 | 9 | 3.75566e-21 |
| Rhododendron simsii | chr13 | 5 | CH_rsi_429 | 3 | 3 | 0.000000218628 |
| Salvia bowleyana | GWHASIU00000003 | 5 | CH_sbo_352 | 3 | 4 | 0.00000104321 |
| Salix brachista | GWHAAZH00000004 | 5 | CH_sbr_674 | 2 | 2 | 0.00063014 |
| Sechium edule | LG02 | 5 | CH_sed_510 | 2 | 2 | 0.000713419 |
| Sequoiadendron giganteum | chr5 | 5 | CH_sgi_1169 | 3 | 3 | 0.000000299026 |
| Solanum lycopersicum | SL4.0ch01 | 5 | CH_sly_304 | 3 | 3 | 0.000000103353 |
| Solanum lycopersicum | SL4.0ch06 | 5 | CH_sly_964 | 2 | 2 | 0.000880411 |
| Solanum pennellii | Spenn-ch01 | 5 | CH_spe_264 | 3 | 3 | 0.0000000593529 |
| Solanum pennellii | Spenn-ch06 | 5 | CH_spe_863 | 2 | 2 | 0.000667186 |
| Solanum tuberosum | ST4.03ch01 | 5 | CH_stu_336 | 3 | 3 | 0.0000000787843 |
| Solanum tuberosum | ST4.03ch06 | 5 | CH_stu_927 | 2 | 2 | 0.000768679 |
| Selenicereus undatus | Scaffold_19641 | 5 | CH_sun_397 | 2 | 2 | 0.000726639 |
| Theobroma cacao | Chromosome_6 | 5 | CH_tca_333 | 3 | 3 | 0.000000281615 |
| Trifolium pratense | Tp57577_TGAC_v2_scaf_291 | 5 | CH_tpr_96 | 4 | 5 | 0.0000000000975958 |
| Tripterygium wilfordii | NC_052233.1 | 5 | CH_twi_303 | 3 | 8 | 0.0000146114 |
| Vitis vinifera | chr15 | 5 | CH_vvi_306 | 3 | 3 | 0.000000303754 |
| Anthoceros agrestis | Sc2ySwM_362 | 6 | CH_aag_212 | 2 | 2 | 0.0000802568 |
| Acer truncatum | chr5 | 6 | CH_acertr_153 | 4 | 5 | 0.00000000110352 |
| Acer truncatum | chr5 | 6 | CH_acertr_62 | 5 | 5 | 0.0000000000000466913 |
| Avicennia marina | ScioBoG_94932_HRSCAF_95134 | 6 | CH_ama_203 | 2 | 2 | 0.000517331 |
| Camellia sinensis var. sinensis | Chr11 | 6 | CH_camsi_604 | 3 | 6 | 0.000000630703 |
| Cannabis sativa | NC_044375.1 | 6 | CH_cansat_585 | 2 | 2 | 0.000656642 |
| Corylus avellana | 11 | 6 | CH_cav_740 | 2 | 2 | 0.000460017 |
| Carpinus fangiana | Cfa01 | 6 | CH_cfa_240 | 3 | 3 | 0.000000172079 |
| Corchorus olitorius | AWUE01020729.1 | 6 | CH_col_24 | 5 | 6 | 0.00000000000196674 |
| Carica papaya | supercontig_9 | 6 | CH_cpa_591 | 2 | 2 | 0.000570396 |
| Davidia involucrata | GWHABJS00000020 | 6 | CH_din_757 | 2 | 2 | 0.000500125 |
| Erigeron canadensis | Conyza_canadensis_scaffold:3 | 6 | CH_eca_828 | 2 | 2 | 0.000673083 |
| Fragaria vesca | Fvb3 | 6 | CH_fve_37 | 8 | 15 | 2.46977e-21 |
| Gossypium hirsutum | A09 | 6 | CH_ghi_248 | 5 | 7 | 0.0000000000135963 |
| Gossypium hirsutum | D09 | 6 | CH_ghi_662 | 3 | 3 | 0.00000480729 |
| Gossypium raimondii | Chr06 | 6 | CH_gra_318 | 3 | 3 | 0.00000196163 |
| Hydrangea macrophylla | Hma1.2p1_0227F.1 | 6 | CH_hma_166 | 3 | 3 | 0.000000370226 |
| Lotus japonicus | chr3 | 6 | CH_lja_210 | 3 | 3 | 0.000000268461 |
| Lactuca sativa | Lsat_1_v8_lg_9 | 6 | CH_lsa_876 | 2 | 2 | 0.00077101 |
| Magnolia biondii | Chr04 | 6 | CH_mbi_1274 | 2 | 3 | 0.00087414 |
| Malus domestica | Chr11 | 6 | CH_mdo_110 | 5 | 5 | 0.0000000000000199625 |
| Manihot esculenta | Chromosome05 | 6 | CH_mes_178 | 4 | 4 | 0.0000000000478185 |
| Medicago truncatula | chr3 | 6 | CH_mtr_69 | 7 | 7 | 4.54725e-23 |
| Nicotiana tabacum | Nitab4.5_0000744 | 6 | CH_nta_220 | 2 | 2 | 0.000109727 |
| Petunia axillaris | Peaxi162Scf00021 | 6 | CH_pax_234 | 3 | 3 | 0.000000415808 |
| Petunia axillaris | Peaxi162Scf01058 | 6 | CH_pax_235 | 3 | 3 | 0.000000415808 |
| Prunus persica | Pp06 | 6 | CH_ppe_99 | 6 | 6 | 4.80398e-17 |
| Pisum sativum | chr4LG4 | 6 | CH_psa_252 | 3 | 4 | 0.000000326504 |
| Pisum sativum | chr5LG3 | 6 | CH_psa_745 | 2 | 2 | 0.000782452 |
| Papaver somniferum | NW_020627707.1 | 6 | CH_pso_585 | 4 | 28 | 0.00000127478 |
| Papaver somniferum | NC_039365.1 | 6 | CH_pso_918 | 3 | 12 | 0.0000936983 |
| Quercus lobata | 8 | 6 | CH_qlo_335 | 5 | 5 | 0.0000000000000685928 |
| Quercus lobata | 1 | 6 | CH_qlo_540 | 4 | 4 | 0.000000000295216 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 6 | CH_rch_85 | 7 | 9 | 3.75566e-21 |
| Rhododendron simsii | chr13 | 6 | CH_rsi_429 | 3 | 3 | 0.000000218628 |
| Salvia bowleyana | GWHASIU00000003 | 6 | CH_sbo_352 | 3 | 4 | 0.00000104321 |
| Salix brachista | GWHAAZH00000004 | 6 | CH_sbr_674 | 2 | 2 | 0.00063014 |
| Sechium edule | LG02 | 6 | CH_sed_510 | 2 | 2 | 0.000713419 |
| Sequoiadendron giganteum | chr5 | 6 | CH_sgi_1169 | 3 | 3 | 0.000000299026 |
| Solanum lycopersicum | SL4.0ch01 | 6 | CH_sly_304 | 3 | 3 | 0.000000103353 |
| Solanum lycopersicum | SL4.0ch06 | 6 | CH_sly_964 | 2 | 2 | 0.000880411 |
| Solanum pennellii | Spenn-ch01 | 6 | CH_spe_264 | 3 | 3 | 0.0000000593529 |
| Solanum pennellii | Spenn-ch06 | 6 | CH_spe_863 | 2 | 2 | 0.000667186 |
| Solanum tuberosum | ST4.03ch01 | 6 | CH_stu_336 | 3 | 3 | 0.0000000787843 |
| Solanum tuberosum | ST4.03ch06 | 6 | CH_stu_927 | 2 | 2 | 0.000768679 |
| Selenicereus undatus | Scaffold_19641 | 6 | CH_sun_397 | 2 | 2 | 0.000726639 |
| Theobroma cacao | Chromosome_6 | 6 | CH_tca_333 | 3 | 3 | 0.000000281615 |
| Trifolium pratense | Tp57577_TGAC_v2_scaf_291 | 6 | CH_tpr_96 | 4 | 5 | 0.0000000000975958 |
| Tripterygium wilfordii | NC_052233.1 | 6 | CH_twi_303 | 3 | 8 | 0.0000146114 |
| Vitis vinifera | chr15 | 6 | CH_vvi_306 | 3 | 3 | 0.000000303754 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |