Functional clusters
Information
- Type InterPro
- Description Magnesium transporter MRS2-like
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Amborella trichopoda | AmTr_v1.0_scaffold00019 | 5 | CH_atr_183 | 4 | 7 | 0.0000000376056 |
| Amborella trichopoda | AmTr_v1.0_scaffold00017 | 5 | CH_atr_277 | 3 | 3 | 0.00000270745 |
| Beta vulgaris | Chr2_EL10_PGA_scaffold6 | 5 | CH_bvu_281 | 3 | 4 | 0.00000904537 |
| Camellia sinensis var. sinensis | Chr5 | 5 | CH_camsi_58 | 9 | 18 | 3.76408e-20 |
| Camellia sinensis var. sinensis | Chr13 | 5 | CH_camsi_832 | 3 | 3 | 0.0000156441 |
| Coffea canephora | chr0 | 5 | CH_ccan_195 | 3 | 8 | 0.000000346596 |
| Coffea canephora | chr3 | 5 | CH_ccan_36 | 5 | 25 | 0.00000000000025456 |
| Daucus carota | DCARv2_Chr7 | 5 | CH_dca_151 | 4 | 5 | 0.00000000708045 |
| Eucalyptus grandis | Chr08 | 5 | CH_egr_1033 | 3 | 5 | 0.0000497527 |
| Eucalyptus grandis | Chr10 | 5 | CH_egr_987 | 3 | 4 | 0.0000199086 |
| Fragaria vesca | Fvb2 | 5 | CH_fve_580 | 3 | 11 | 0.000102922 |
| Magnolia biondii | Chr04 | 5 | CH_mbi_65 | 7 | 14 | 2.80726e-18 |
| Medicago truncatula | chr1 | 5 | CH_mtr_775 | 3 | 3 | 0.00000389956 |
| Papaver somniferum | NC_039363.1 | 5 | CH_pso_656 | 3 | 4 | 0.0000034713 |
| Populus trichocarpa | Chr01 | 5 | CH_ptr_496 | 3 | 5 | 0.0000227888 |
| Phaseolus vulgaris | Chr08 | 5 | CH_pvu_643 | 4 | 62 | 0.000466414 |
| Quercus lobata | 11 | 5 | CH_qlo_515 | 4 | 4 | 0.000000000136253 |
| Rhododendron simsii | chr13 | 5 | CH_rsi_546 | 3 | 3 | 0.00000605288 |
| Salvia bowleyana | GWHASIU00000005 | 5 | CH_sbo_137 | 5 | 6 | 0.000000000000248166 |
| Sequoiadendron giganteum | chr2 | 5 | CH_sgi_1382 | 3 | 3 | 0.00000344948 |
| Sequoiadendron giganteum | chr10 | 5 | CH_sgi_1383 | 3 | 3 | 0.00000344948 |
| Sequoiadendron giganteum | chr11 | 5 | CH_sgi_1384 | 3 | 3 | 0.00000344948 |
| Sequoiadendron giganteum | chr11 | 5 | CH_sgi_1385 | 3 | 3 | 0.00000344948 |
| Sequoiadendron giganteum | chr2 | 5 | CH_sgi_859 | 4 | 5 | 0.00000000671987 |
| Trochodendron aralioides | group11 | 5 | CH_tar_124 | 6 | 25 | 0.000000000167375 |
| Trochodendron aralioides | group16 | 5 | CH_tar_190 | 4 | 5 | 0.0000000194202 |
| Theobroma cacao | Chromosome_6 | 5 | CH_tca_360 | 3 | 3 | 0.000000675875 |
| Amborella trichopoda | AmTr_v1.0_scaffold00019 | 6 | CH_atr_183 | 4 | 7 | 0.0000000376056 |
| Amborella trichopoda | AmTr_v1.0_scaffold00017 | 6 | CH_atr_277 | 3 | 3 | 0.00000270745 |
| Beta vulgaris | Chr2_EL10_PGA_scaffold6 | 6 | CH_bvu_281 | 3 | 4 | 0.00000904537 |
| Camellia sinensis var. sinensis | Chr5 | 6 | CH_camsi_58 | 9 | 18 | 3.76408e-20 |
| Camellia sinensis var. sinensis | Chr13 | 6 | CH_camsi_832 | 3 | 3 | 0.0000156441 |
| Coffea canephora | chr0 | 6 | CH_ccan_195 | 3 | 8 | 0.000000346596 |
| Coffea canephora | chr3 | 6 | CH_ccan_36 | 5 | 25 | 0.00000000000025456 |
| Daucus carota | DCARv2_Chr7 | 6 | CH_dca_151 | 4 | 5 | 0.00000000708045 |
| Eucalyptus grandis | Chr08 | 6 | CH_egr_1033 | 3 | 5 | 0.0000497527 |
| Eucalyptus grandis | Chr10 | 6 | CH_egr_987 | 3 | 4 | 0.0000199086 |
| Fragaria vesca | Fvb2 | 6 | CH_fve_580 | 3 | 11 | 0.000102922 |
| Magnolia biondii | Chr04 | 6 | CH_mbi_65 | 7 | 14 | 2.80726e-18 |
| Medicago truncatula | chr1 | 6 | CH_mtr_775 | 3 | 3 | 0.00000389956 |
| Papaver somniferum | NC_039363.1 | 6 | CH_pso_656 | 3 | 4 | 0.0000034713 |
| Populus trichocarpa | Chr01 | 6 | CH_ptr_496 | 3 | 5 | 0.0000227888 |
| Phaseolus vulgaris | Chr08 | 6 | CH_pvu_643 | 4 | 62 | 0.000466414 |
| Quercus lobata | 11 | 6 | CH_qlo_515 | 4 | 4 | 0.000000000136253 |
| Rhododendron simsii | chr13 | 6 | CH_rsi_546 | 3 | 3 | 0.00000605288 |
| Salvia bowleyana | GWHASIU00000005 | 6 | CH_sbo_137 | 5 | 6 | 0.000000000000248166 |
| Sequoiadendron giganteum | chr2 | 6 | CH_sgi_1382 | 3 | 3 | 0.00000344948 |
| Sequoiadendron giganteum | chr10 | 6 | CH_sgi_1383 | 3 | 3 | 0.00000344948 |
| Sequoiadendron giganteum | chr11 | 6 | CH_sgi_1384 | 3 | 3 | 0.00000344948 |
| Sequoiadendron giganteum | chr11 | 6 | CH_sgi_1385 | 3 | 3 | 0.00000344948 |
| Sequoiadendron giganteum | chr2 | 6 | CH_sgi_859 | 4 | 5 | 0.00000000671987 |
| Trochodendron aralioides | group11 | 6 | CH_tar_124 | 6 | 25 | 0.000000000167375 |
| Trochodendron aralioides | group16 | 6 | CH_tar_190 | 4 | 5 | 0.0000000194202 |
| Theobroma cacao | Chromosome_6 | 6 | CH_tca_360 | 3 | 3 | 0.000000675875 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |