Functional clusters
Information
- Type InterPro
- Description Yippee family
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Actinidia chinensis | Lachesis_group24 | 5 | CH_ach_63 | 5 | 11 | 0.00000000159861 |
| Arabidopsis thaliana | Chr4 | 5 | CH_ath_611 | 2 | 2 | 0.000601633 |
| Brassica carinata | Contig531 | 5 | CH_bca_104 | 6 | 11 | 0.0000000000000341248 |
| Brassica napus | C02 | 5 | CH_bna_860 | 3 | 5 | 0.000018877 |
| Brassica oleracea | C8 | 5 | CH_bol_340 | 5 | 67 | 0.00000126453 |
| Brassica rapa | A02 | 5 | CH_bra_122 | 4 | 6 | 0.00000000847088 |
| Beta vulgaris | Chr8_EL10_PGA_scaffold4 | 5 | CH_bvu_268 | 3 | 4 | 0.00000678424 |
| Camellia sinensis var. sinensis | Chr1 | 5 | CH_camsi_420 | 4 | 7 | 0.0000000184131 |
| Capsicum annuum | PGAv.1.6.scaffold481 | 5 | CH_can_859 | 2 | 2 | 0.000826105 |
| Carpinus fangiana | Cfa06 | 5 | CH_cfa_614 | 2 | 2 | 0.000757346 |
| Carya illinoinensis | Chr05 | 5 | CH_cil_634 | 3 | 9 | 0.000175906 |
| Erigeron canadensis | Conyza_canadensis_scaffold:6 | 5 | CH_eca_883 | 2 | 2 | 0.000942317 |
| Eucalyptus grandis | Chr04 | 5 | CH_egr_810 | 3 | 4 | 0.000000847827 |
| Malus domestica | Chr06 | 5 | CH_mdo_511 | 4 | 12 | 0.000000313273 |
| Manihot esculenta | Chromosome05 | 5 | CH_mes_436 | 3 | 5 | 0.0000122993 |
| Petunia axillaris | Peaxi162Scf00740 | 5 | CH_pax_267 | 3 | 3 | 0.00000122515 |
| Pisum sativum | chr3LG5 | 5 | CH_psa_245 | 4 | 14 | 0.000000210599 |
| Quercus lobata | 7 | 5 | CH_qlo_1793 | 2 | 2 | 0.000774433 |
| Rosa chinensis | RcHm_v2.0_Chr1 | 5 | CH_rch_626 | 3 | 3 | 0.000000286069 |
| Sequoiadendron giganteum | chr7 | 5 | CH_sgi_2589 | 2 | 2 | 0.000730727 |
| Sequoiadendron giganteum | chr3 | 5 | CH_sgi_2590 | 2 | 2 | 0.000730727 |
| Solanum lycopersicum | SL4.0ch06 | 5 | CH_sly_297 | 5 | 20 | 0.0000000900562 |
| Solanum lycopersicum | SL4.0ch03 | 5 | CH_sly_34 | 10 | 17 | 6.0398e-24 |
| Solanum pennellii | Spenn-ch06 | 5 | CH_spe_216 | 5 | 19 | 0.0000000114302 |
| Solanum tuberosum | ST4.03ch06 | 5 | CH_stu_500 | 4 | 22 | 0.0000113791 |
| Solanum tuberosum | ST4.03ch03 | 5 | CH_stu_525 | 4 | 25 | 0.0000196585 |
| Zea mays | 1 | 5 | CH_zma_526 | 2 | 2 | 0.000766969 |
| Actinidia chinensis | Lachesis_group24 | 6 | CH_ach_63 | 5 | 11 | 0.00000000159861 |
| Arabidopsis thaliana | Chr4 | 6 | CH_ath_611 | 2 | 2 | 0.000601633 |
| Brassica carinata | Contig531 | 6 | CH_bca_104 | 6 | 11 | 0.0000000000000341248 |
| Brassica napus | C02 | 6 | CH_bna_860 | 3 | 5 | 0.000018877 |
| Brassica oleracea | C8 | 6 | CH_bol_340 | 5 | 67 | 0.00000126453 |
| Brassica rapa | A02 | 6 | CH_bra_122 | 4 | 6 | 0.00000000847088 |
| Beta vulgaris | Chr8_EL10_PGA_scaffold4 | 6 | CH_bvu_268 | 3 | 4 | 0.00000678424 |
| Camellia sinensis var. sinensis | Chr1 | 6 | CH_camsi_420 | 4 | 7 | 0.0000000184131 |
| Capsicum annuum | PGAv.1.6.scaffold481 | 6 | CH_can_859 | 2 | 2 | 0.000826105 |
| Carpinus fangiana | Cfa06 | 6 | CH_cfa_614 | 2 | 2 | 0.000757346 |
| Carya illinoinensis | Chr05 | 6 | CH_cil_634 | 3 | 9 | 0.000175906 |
| Erigeron canadensis | Conyza_canadensis_scaffold:6 | 6 | CH_eca_883 | 2 | 2 | 0.000942317 |
| Eucalyptus grandis | Chr04 | 6 | CH_egr_810 | 3 | 4 | 0.000000847827 |
| Malus domestica | Chr06 | 6 | CH_mdo_511 | 4 | 12 | 0.000000313273 |
| Manihot esculenta | Chromosome05 | 6 | CH_mes_436 | 3 | 5 | 0.0000122993 |
| Petunia axillaris | Peaxi162Scf00740 | 6 | CH_pax_267 | 3 | 3 | 0.00000122515 |
| Pisum sativum | chr3LG5 | 6 | CH_psa_245 | 4 | 14 | 0.000000210599 |
| Quercus lobata | 7 | 6 | CH_qlo_1793 | 2 | 2 | 0.000774433 |
| Rosa chinensis | RcHm_v2.0_Chr1 | 6 | CH_rch_626 | 3 | 3 | 0.000000286069 |
| Sequoiadendron giganteum | chr7 | 6 | CH_sgi_2589 | 2 | 2 | 0.000730727 |
| Sequoiadendron giganteum | chr3 | 6 | CH_sgi_2590 | 2 | 2 | 0.000730727 |
| Solanum lycopersicum | SL4.0ch06 | 6 | CH_sly_297 | 5 | 20 | 0.0000000900562 |
| Solanum lycopersicum | SL4.0ch03 | 6 | CH_sly_34 | 10 | 17 | 6.0398e-24 |
| Solanum pennellii | Spenn-ch06 | 6 | CH_spe_216 | 5 | 19 | 0.0000000114302 |
| Solanum tuberosum | ST4.03ch06 | 6 | CH_stu_500 | 4 | 22 | 0.0000113791 |
| Solanum tuberosum | ST4.03ch03 | 6 | CH_stu_525 | 4 | 25 | 0.0000196585 |
| Zea mays | 1 | 6 | CH_zma_526 | 2 | 2 | 0.000766969 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |