Functional clusters
Information
- Type InterPro
- Description Nuclear pore complex protein NUP98-NUP96
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr10 | 5 | CH_acertr_93 | 4 | 5 | 0.00000000000525574 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.03 | 5 | CH_arhy_763 | 3 | 12 | 0.0000103469 |
| Amborella trichopoda | AmTr_v1.0_scaffold00010 | 5 | CH_atr_560 | 2 | 2 | 0.000476644 |
| Brassica rapa | A02 | 5 | CH_bra_390 | 2 | 2 | 0.000128794 |
| Cardamine hirsuta | Chr2 | 5 | CH_chi_472 | 2 | 2 | 0.0000691204 |
| Erythranthe guttata | scaffold_2 | 5 | CH_egut_193 | 4 | 10 | 0.00000000121575 |
| Helianthus annuus | HanXRQChr02 | 5 | CH_han_464 | 3 | 4 | 0.000000179185 |
| Oryza sativa ssp. japonica | chr12 | 5 | CH_osa_574 | 2 | 2 | 0.000158437 |
| Salvia bowleyana | GWHASIU00000003 | 5 | CH_sbo_357 | 3 | 6 | 0.00000124179 |
| Simmondsia chinensis | GWHAASQ00000024 | 5 | CH_sci_492 | 2 | 3 | 0.000766229 |
| Sequoiadendron giganteum | HRSCAF_1 | 5 | CH_sgi_1297 | 3 | 5 | 0.0000012457 |
| Trochodendron aralioides | group11 | 5 | CH_tar_757 | 2 | 2 | 0.00036022 |
| Vaccinium macrocarpon | chr5_Vaccinium_macrocarpon_Stevens_v1 | 5 | CH_vma_678 | 2 | 2 | 0.000557543 |
| Vanilla planifolia | CM028162.1 | 5 | CH_vpl_249 | 3 | 11 | 0.00000540224 |
| Acer truncatum | chr10 | 6 | CH_acertr_93 | 4 | 5 | 0.00000000000525574 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.03 | 6 | CH_arhy_763 | 3 | 12 | 0.0000103469 |
| Amborella trichopoda | AmTr_v1.0_scaffold00010 | 6 | CH_atr_560 | 2 | 2 | 0.000476644 |
| Brassica rapa | A02 | 6 | CH_bra_390 | 2 | 2 | 0.000128794 |
| Cardamine hirsuta | Chr2 | 6 | CH_chi_472 | 2 | 2 | 0.0000691204 |
| Erythranthe guttata | scaffold_2 | 6 | CH_egut_193 | 4 | 10 | 0.00000000121575 |
| Helianthus annuus | HanXRQChr02 | 6 | CH_han_464 | 3 | 4 | 0.000000179185 |
| Oryza sativa ssp. japonica | chr12 | 6 | CH_osa_574 | 2 | 2 | 0.000158437 |
| Salvia bowleyana | GWHASIU00000003 | 6 | CH_sbo_357 | 3 | 6 | 0.00000124179 |
| Simmondsia chinensis | GWHAASQ00000024 | 6 | CH_sci_492 | 2 | 3 | 0.000766229 |
| Sequoiadendron giganteum | HRSCAF_1 | 6 | CH_sgi_1297 | 3 | 5 | 0.0000012457 |
| Trochodendron aralioides | group11 | 6 | CH_tar_757 | 2 | 2 | 0.00036022 |
| Vaccinium macrocarpon | chr5_Vaccinium_macrocarpon_Stevens_v1 | 6 | CH_vma_678 | 2 | 2 | 0.000557543 |
| Vanilla planifolia | CM028162.1 | 6 | CH_vpl_249 | 3 | 11 | 0.00000540224 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |