Functional clusters

Information

  • Type InterPro
  • Description Endonuclease/exonuclease/phosphatase superfamily

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Brassica carinata ChrB08 5 CH_bca_1353 4 5 0.0000771288
Brassica oleracea C6 5 CH_bol_110 7 13 0.000000000111963
Citrullus lanatus CG_Chr03 5 CH_cla_64 6 13 0.00000000540977
Chlamydomonas reinhardtii chromosome_9 5 CH_cre_15 7 9 0.0000000000133321
Davidia involucrata GWHABJS00000016 5 CH_din_367 4 4 0.00000496641
Erigeron canadensis Conyza_canadensis_scaffold:3 5 CH_eca_378 10 78 0.00000253511
Erigeron canadensis Conyza_canadensis_scaffold:8 5 CH_eca_498 9 73 0.0000336875
Eucalyptus grandis Chr08 5 CH_egr_234 10 41 1.19482e-16
Lupinus albus Lalb_Chr25 5 CH_lal_464 3 3 0.000114531
Lonicera japonica GWHAAZE00000008 5 CH_lonja_968 3 3 0.000203468
Magnolia biondii Chr09 5 CH_mbi_1055 5 11 0.000323643
Malus domestica Chr06 5 CH_mdo_866 3 3 0.0000597938
Papaver somniferum NC_039358.1 5 CH_pso_325 15 77 0.00000000175509
Papaver somniferum NC_039364.1 5 CH_pso_78 19 56 5.06971e-18
Quercus lobata 5 5 CH_qlo_1185 4 4 0.0000364173
Sapria himalayana scaffold55_3650763 5 CH_shi_120 12 29 0.0000000250633
Sapria himalayana scaffold152_492251 5 CH_shi_121 14 46 0.0000000428948
Sapria himalayana scaffold81_1893685 5 CH_shi_153 17 80 0.000000106238
Sapria himalayana scaffold2_22354274 5 CH_shi_167 10 20 0.000000201924
Sapria himalayana scaffold7_18583372 5 CH_shi_211 9 18 0.00000239358
Sapria himalayana scaffold73_2239179 5 CH_shi_214 11 33 0.00000372404
Sapria himalayana scaffold63_2876970 5 CH_shi_220 14 67 0.0000112006
Sapria himalayana scaffold31_7046607 5 CH_shi_222 9 21 0.0000136016
Sapria himalayana scaffold91_1610071 5 CH_shi_223 8 15 0.0000145465
Sapria himalayana scaffold40_4792918 5 CH_shi_236 13 62 0.0000460213
Sapria himalayana scaffold5_19632047 5 CH_shi_242 8 17 0.0000527556
Sapria himalayana scaffold20_10339243 5 CH_shi_245 13 63 0.000056774
Sapria himalayana scaffold103_1210301 5 CH_shi_35 21 77 0.00000000000122321
Sapria himalayana scaffold139_632678 5 CH_shi_369 11 45 0.000151927
Sapria himalayana scaffold43_4515541 5 CH_shi_445 5 5 0.000220345
Sapria himalayana scaffold20_10339243 5 CH_shi_47 18 57 0.0000000000121979
Sapria himalayana scaffold3_21451142 5 CH_shi_506 13 73 0.000378777
Sapria himalayana scaffold106_1179380 5 CH_shi_507 9 29 0.000392983
Sapria himalayana scaffold23_8152026 5 CH_shi_510 11 50 0.000503582
Sapria himalayana scaffold55_3650763 5 CH_shi_557 7 15 0.000627678
Sapria himalayana scaffold36_5715340 5 CH_shi_559 10 41 0.000791722
Sapria himalayana scaffold70_2545932 5 CH_shi_57 16 45 0.0000000000624413
Sapria himalayana scaffold15_12544384 5 CH_shi_72 12 22 0.000000000362016
Sapria himalayana scaffold44_4510576 5 CH_shi_9 21 44 1.25628e-18
Sapria himalayana scaffold116_963302 5 CH_shi_99 16 58 0.00000000584585
Selaginella moellendorffii scaffold_94 5 CH_smo_239 3 3 0.000119517
Solanum pennellii Spenn-ch00 5 CH_spe_244 10 80 0.000000032017
Solanum pennellii Spenn-ch00 5 CH_spe_330 9 73 0.000000528385
Solanum pennellii Spenn-ch00 5 CH_spe_752 7 67 0.0003551
Trifolium pratense Tp57577_TGAC_v2_LG3 5 CH_tpr_655 3 3 0.000358121
Vaccinium macrocarpon chr1_Vaccinium_macrocarpon_Stevens_v1 5 CH_vma_259 4 4 0.000000704971
Brassica carinata ChrB08 6 CH_bca_1353 4 5 0.0000771288
Brassica oleracea C6 6 CH_bol_110 7 13 0.000000000111963
Citrullus lanatus CG_Chr03 6 CH_cla_64 6 13 0.00000000540977
Chlamydomonas reinhardtii chromosome_9 6 CH_cre_15 7 9 0.0000000000133321
Davidia involucrata GWHABJS00000016 6 CH_din_367 4 4 0.00000496641
Erigeron canadensis Conyza_canadensis_scaffold:3 6 CH_eca_378 10 78 0.00000253511
Erigeron canadensis Conyza_canadensis_scaffold:8 6 CH_eca_498 9 73 0.0000336875
Eucalyptus grandis Chr08 6 CH_egr_234 10 41 1.19482e-16
Lupinus albus Lalb_Chr25 6 CH_lal_464 3 3 0.000114531
Lonicera japonica GWHAAZE00000008 6 CH_lonja_968 3 3 0.000203468
Magnolia biondii Chr09 6 CH_mbi_1055 5 11 0.000323643
Malus domestica Chr06 6 CH_mdo_866 3 3 0.0000597938
Papaver somniferum NC_039358.1 6 CH_pso_325 15 77 0.00000000175509
Papaver somniferum NC_039364.1 6 CH_pso_78 19 56 5.06971e-18
Quercus lobata 5 6 CH_qlo_1185 4 4 0.0000364173
Sapria himalayana scaffold55_3650763 6 CH_shi_120 12 29 0.0000000250633
Sapria himalayana scaffold152_492251 6 CH_shi_121 14 46 0.0000000428948
Sapria himalayana scaffold81_1893685 6 CH_shi_153 17 80 0.000000106238
Sapria himalayana scaffold2_22354274 6 CH_shi_167 10 20 0.000000201924
Sapria himalayana scaffold7_18583372 6 CH_shi_211 9 18 0.00000239358
Sapria himalayana scaffold73_2239179 6 CH_shi_214 11 33 0.00000372404
Sapria himalayana scaffold63_2876970 6 CH_shi_220 14 67 0.0000112006
Sapria himalayana scaffold31_7046607 6 CH_shi_222 9 21 0.0000136016
Sapria himalayana scaffold91_1610071 6 CH_shi_223 8 15 0.0000145465
Sapria himalayana scaffold40_4792918 6 CH_shi_236 13 62 0.0000460213
Sapria himalayana scaffold5_19632047 6 CH_shi_242 8 17 0.0000527556
Sapria himalayana scaffold20_10339243 6 CH_shi_245 13 63 0.000056774
Sapria himalayana scaffold103_1210301 6 CH_shi_35 21 77 0.00000000000122321
Sapria himalayana scaffold139_632678 6 CH_shi_369 11 45 0.000151927
Sapria himalayana scaffold43_4515541 6 CH_shi_445 5 5 0.000220345
Sapria himalayana scaffold20_10339243 6 CH_shi_47 18 57 0.0000000000121979
Sapria himalayana scaffold3_21451142 6 CH_shi_506 13 73 0.000378777
Sapria himalayana scaffold106_1179380 6 CH_shi_507 9 29 0.000392983
Sapria himalayana scaffold23_8152026 6 CH_shi_510 11 50 0.000503582
Sapria himalayana scaffold55_3650763 6 CH_shi_557 7 15 0.000627678
Sapria himalayana scaffold36_5715340 6 CH_shi_559 10 41 0.000791722
Sapria himalayana scaffold70_2545932 6 CH_shi_57 16 45 0.0000000000624413
Sapria himalayana scaffold15_12544384 6 CH_shi_72 12 22 0.000000000362016
Sapria himalayana scaffold44_4510576 6 CH_shi_9 21 44 1.25628e-18
Sapria himalayana scaffold116_963302 6 CH_shi_99 16 58 0.00000000584585
Selaginella moellendorffii scaffold_94 6 CH_smo_239 3 3 0.000119517
Solanum pennellii Spenn-ch00 6 CH_spe_244 10 80 0.000000032017
Solanum pennellii Spenn-ch00 6 CH_spe_330 9 73 0.000000528385
Solanum pennellii Spenn-ch00 6 CH_spe_752 7 67 0.0003551
Trifolium pratense Tp57577_TGAC_v2_LG3 6 CH_tpr_655 3 3 0.000358121
Vaccinium macrocarpon chr1_Vaccinium_macrocarpon_Stevens_v1 6 CH_vma_259 4 4 0.000000704971

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001