Functional clusters

Information

  • Type InterPro
  • Description Ribonuclease H superfamily

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Arabidopsis lyrata scaffold_5 5 CH_aly_630 4 7 0.000457881
Arabidopsis thaliana Chr3 5 CH_ath_103 6 8 0.0000000000420813
Beta vulgaris Chr4_EL10_PGA_scaffold1 5 CH_bvu_259 5 5 0.00000355719
Chara braunii BFEA01000010 5 CH_cbr_156 26 80 0.000054224
Chara braunii BFEA01000306 5 CH_cbr_360 8 9 0.00078719
Erigeron canadensis Conyza_canadensis_scaffold:7 5 CH_eca_232 30 58 0.0000000376558
Erigeron canadensis Conyza_canadensis_scaffold:5 5 CH_eca_265 30 60 0.00000011826
Erigeron canadensis Conyza_canadensis_scaffold:8 5 CH_eca_266 30 60 0.00000011826
Erigeron canadensis Conyza_canadensis_scaffold:3 5 CH_eca_298 30 62 0.000000348024
Erigeron canadensis Conyza_canadensis_scaffold:1 5 CH_eca_316 30 63 0.000000583756
Erigeron canadensis Conyza_canadensis_scaffold:4 5 CH_eca_380 30 66 0.00000253786
Erigeron canadensis Conyza_canadensis_scaffold:2 5 CH_eca_415 30 69 0.00000634968
Erigeron canadensis Conyza_canadensis_scaffold:5 5 CH_eca_416 30 68 0.00000634968
Erigeron canadensis Conyza_canadensis_scaffold:5 5 CH_eca_494 27 60 0.0000303198
Erigeron canadensis Conyza_canadensis_scaffold:8 5 CH_eca_555 27 61 0.0000478243
Erigeron canadensis Conyza_canadensis_scaffold:2 5 CH_eca_594 30 75 0.000112423
Erigeron canadensis Conyza_canadensis_scaffold:3 5 CH_eca_595 30 75 0.000112423
Erigeron canadensis Conyza_canadensis_scaffold:6 5 CH_eca_596 30 75 0.000112423
Erigeron canadensis Conyza_canadensis_scaffold:9 5 CH_eca_597 30 75 0.000112423
Erigeron canadensis Conyza_canadensis_scaffold:5 5 CH_eca_651 30 76 0.000163248
Erigeron canadensis Conyza_canadensis_scaffold:2 5 CH_eca_709 30 78 0.000335739
Erigeron canadensis Conyza_canadensis_scaffold:3 5 CH_eca_711 29 74 0.000359563
Erigeron canadensis Conyza_canadensis_scaffold:9 5 CH_eca_779 30 79 0.000475778
Erigeron canadensis Conyza_canadensis_scaffold:3 5 CH_eca_802 30 80 0.000669126
Lonicera japonica GWHAAZE00000005 5 CH_lonja_298 6 6 0.000000000381665
Magnolia biondii Chr14 5 CH_mbi_1278 14 79 0.000882806
Magnolia biondii Chr04 5 CH_mbi_335 10 15 0.0000000194463
Magnolia biondii Chr15 5 CH_mbi_820 11 37 0.0000875213
Magnolia biondii Chr01 5 CH_mbi_824 6 7 0.000100955
Magnolia biondii Chr05 5 CH_mbi_946 11 39 0.000163377
Punica granatum NC_045128.1 5 CH_pgr_199 6 8 0.0000000408152
Punica granatum NC_045127.1 5 CH_pgr_281 10 76 0.00000126296
Punica granatum NC_045131.1 5 CH_pgr_401 5 10 0.0000595225
Phaseolus vulgaris Chr06 5 CH_pvu_708 3 3 0.000983743
Quercus lobata 3 5 CH_qlo_319 12 19 0.0000000000000284361
Solanum pennellii Spenn-ch10 5 CH_spe_335 30 65 0.000000637277
Solanum pennellii Spenn-ch07 5 CH_spe_382 22 39 0.00000218762
Solanum pennellii Spenn-ch01 5 CH_spe_474 30 72 0.0000145661
Solanum pennellii Spenn-ch04 5 CH_spe_475 30 72 0.0000145661
Solanum pennellii Spenn-ch06 5 CH_spe_517 18 30 0.0000317811
Solanum pennellii Spenn-ch11 5 CH_spe_669 29 74 0.000158262
Solanum pennellii Spenn-ch12 5 CH_spe_745 30 80 0.000291104
Solanum pennellii Spenn-ch10 5 CH_spe_775 23 52 0.000417538
Solanum pennellii Spenn-ch10 5 CH_spe_826 26 65 0.000607558
Solanum pennellii Spenn-ch05 5 CH_spe_831 29 78 0.000648815
Tarenaya hassleriana NW_010965775.1 5 CH_tha_357 3 3 0.000722815
Tripterygium wilfordii NC_052250.1 5 CH_twi_202 11 77 0.000000399367
Tripterygium wilfordii NC_052248.1 5 CH_twi_474 7 39 0.000461831
Vitis vinifera chr10 5 CH_vvi_422 4 6 0.00000962415
Arabidopsis lyrata scaffold_5 6 CH_aly_630 4 7 0.000457881
Arabidopsis thaliana Chr3 6 CH_ath_103 6 8 0.0000000000420813
Beta vulgaris Chr4_EL10_PGA_scaffold1 6 CH_bvu_259 5 5 0.00000355719
Chara braunii BFEA01000010 6 CH_cbr_156 26 80 0.000054224
Chara braunii BFEA01000306 6 CH_cbr_360 8 9 0.00078719
Erigeron canadensis Conyza_canadensis_scaffold:7 6 CH_eca_232 30 58 0.0000000376558
Erigeron canadensis Conyza_canadensis_scaffold:5 6 CH_eca_265 30 60 0.00000011826
Erigeron canadensis Conyza_canadensis_scaffold:8 6 CH_eca_266 30 60 0.00000011826
Erigeron canadensis Conyza_canadensis_scaffold:3 6 CH_eca_298 30 62 0.000000348024
Erigeron canadensis Conyza_canadensis_scaffold:1 6 CH_eca_316 30 63 0.000000583756
Erigeron canadensis Conyza_canadensis_scaffold:4 6 CH_eca_380 30 66 0.00000253786
Erigeron canadensis Conyza_canadensis_scaffold:2 6 CH_eca_415 30 69 0.00000634968
Erigeron canadensis Conyza_canadensis_scaffold:5 6 CH_eca_416 30 68 0.00000634968
Erigeron canadensis Conyza_canadensis_scaffold:5 6 CH_eca_494 27 60 0.0000303198
Erigeron canadensis Conyza_canadensis_scaffold:8 6 CH_eca_555 27 61 0.0000478243
Erigeron canadensis Conyza_canadensis_scaffold:2 6 CH_eca_594 30 75 0.000112423
Erigeron canadensis Conyza_canadensis_scaffold:3 6 CH_eca_595 30 75 0.000112423
Erigeron canadensis Conyza_canadensis_scaffold:6 6 CH_eca_596 30 75 0.000112423
Erigeron canadensis Conyza_canadensis_scaffold:9 6 CH_eca_597 30 75 0.000112423
Erigeron canadensis Conyza_canadensis_scaffold:5 6 CH_eca_651 30 76 0.000163248
Erigeron canadensis Conyza_canadensis_scaffold:2 6 CH_eca_709 30 78 0.000335739
Erigeron canadensis Conyza_canadensis_scaffold:3 6 CH_eca_711 29 74 0.000359563
Erigeron canadensis Conyza_canadensis_scaffold:9 6 CH_eca_779 30 79 0.000475778
Erigeron canadensis Conyza_canadensis_scaffold:3 6 CH_eca_802 30 80 0.000669126
Lonicera japonica GWHAAZE00000005 6 CH_lonja_298 6 6 0.000000000381665
Magnolia biondii Chr14 6 CH_mbi_1278 14 79 0.000882806
Magnolia biondii Chr04 6 CH_mbi_335 10 15 0.0000000194463
Magnolia biondii Chr15 6 CH_mbi_820 11 37 0.0000875213
Magnolia biondii Chr01 6 CH_mbi_824 6 7 0.000100955
Magnolia biondii Chr05 6 CH_mbi_946 11 39 0.000163377
Punica granatum NC_045128.1 6 CH_pgr_199 6 8 0.0000000408152
Punica granatum NC_045127.1 6 CH_pgr_281 10 76 0.00000126296
Punica granatum NC_045131.1 6 CH_pgr_401 5 10 0.0000595225
Phaseolus vulgaris Chr06 6 CH_pvu_708 3 3 0.000983743
Quercus lobata 3 6 CH_qlo_319 12 19 0.0000000000000284361
Solanum pennellii Spenn-ch10 6 CH_spe_335 30 65 0.000000637277
Solanum pennellii Spenn-ch07 6 CH_spe_382 22 39 0.00000218762
Solanum pennellii Spenn-ch01 6 CH_spe_474 30 72 0.0000145661
Solanum pennellii Spenn-ch04 6 CH_spe_475 30 72 0.0000145661
Solanum pennellii Spenn-ch06 6 CH_spe_517 18 30 0.0000317811
Solanum pennellii Spenn-ch11 6 CH_spe_669 29 74 0.000158262
Solanum pennellii Spenn-ch12 6 CH_spe_745 30 80 0.000291104
Solanum pennellii Spenn-ch10 6 CH_spe_775 23 52 0.000417538
Solanum pennellii Spenn-ch10 6 CH_spe_826 26 65 0.000607558
Solanum pennellii Spenn-ch05 6 CH_spe_831 29 78 0.000648815
Tarenaya hassleriana NW_010965775.1 6 CH_tha_357 3 3 0.000722815
Tripterygium wilfordii NC_052250.1 6 CH_twi_202 11 77 0.000000399367
Tripterygium wilfordii NC_052248.1 6 CH_twi_474 7 39 0.000461831
Vitis vinifera chr10 6 CH_vvi_422 4 6 0.00000962415

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001