Functional clusters

Information

  • Type InterPro
  • Description CPSF6/7 family

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Citrus clementina scaffold_4 5 CH_ccl_553 2 2 0.0000820311
Citrullus lanatus CG_Chr09 5 CH_cla_230 2 2 0.0000887115
Cucumis sativus L. chr7 5 CH_csa_361 3 45 0.000148065
Daucus carota DCARv2_Chr2 5 CH_dca_171 3 3 0.0000000244062
Fragaria vesca Fvb4 5 CH_fve_722 2 2 0.000353461
Glycine max Gm18 5 CH_gma_913 2 3 0.000683172
Glycine max Gm08 5 CH_gma_914 2 3 0.000683172
Lotus japonicus chr6 5 CH_lja_414 2 2 0.0000715077
Medicago truncatula chr3 5 CH_mtr_940 2 2 0.0000410863
Punica granatum NC_045133.1 5 CH_pgr_512 2 2 0.000225107
Pisum sativum chr5LG3 5 CH_psa_464 2 2 0.0000521635
Phaseolus vulgaris Chr06 5 CH_pvu_468 2 2 0.0000734727
Rosa chinensis RcHm_v2.0_Chr4 5 CH_rch_1142 2 2 0.000119596
Salix brachista GWHAAZH00000008 5 CH_sbr_546 2 2 0.000189042
Simmondsia chinensis GWHAASQ00000016 5 CH_sci_143 3 3 0.000000217487
Sequoiadendron giganteum chr3 5 CH_sgi_2312 2 2 0.000292291
Sequoiadendron giganteum chr2 5 CH_sgi_2313 2 2 0.000292291
Sapria himalayana scaffold73_2239179 5 CH_shi_436 2 2 0.000171541
Theobroma cacao Chromosome_2 5 CH_tca_729 2 3 0.000659107
Utricularia gibba unitig_8 5 CH_ugi_42 3 3 0.0000000403928
Zea mays 1 5 CH_zma_449 2 2 0.000306788
Citrus clementina scaffold_4 6 CH_ccl_553 2 2 0.0000820311
Citrullus lanatus CG_Chr09 6 CH_cla_230 2 2 0.0000887115
Cucumis sativus L. chr7 6 CH_csa_361 3 45 0.000148065
Daucus carota DCARv2_Chr2 6 CH_dca_171 3 3 0.0000000244062
Fragaria x ananassa Fvb4-1 6 CH_fan_144 4 4 0.0000000000259439
Fragaria vesca Fvb4 6 CH_fve_722 2 2 0.000353461
Glycine max Gm18 6 CH_gma_913 2 3 0.000683172
Glycine max Gm08 6 CH_gma_914 2 3 0.000683172
Lotus japonicus chr6 6 CH_lja_414 2 2 0.0000715077
Medicago truncatula chr3 6 CH_mtr_940 2 2 0.0000410863
Punica granatum NC_045133.1 6 CH_pgr_512 2 2 0.000225107
Pisum sativum chr5LG3 6 CH_psa_464 2 2 0.0000521635
Phaseolus vulgaris Chr06 6 CH_pvu_468 2 2 0.0000734727
Rosa chinensis RcHm_v2.0_Chr4 6 CH_rch_1142 2 2 0.000119596
Salix brachista GWHAAZH00000008 6 CH_sbr_546 2 2 0.000189042
Simmondsia chinensis GWHAASQ00000016 6 CH_sci_143 3 3 0.000000217487
Sequoiadendron giganteum chr3 6 CH_sgi_2312 2 2 0.000292291
Sequoiadendron giganteum chr2 6 CH_sgi_2313 2 2 0.000292291
Sapria himalayana scaffold73_2239179 6 CH_shi_436 2 2 0.000171541
Theobroma cacao Chromosome_2 6 CH_tca_729 2 3 0.000659107
Utricularia gibba unitig_8 6 CH_ugi_42 3 3 0.0000000403928
Zea mays 1 6 CH_zma_449 2 2 0.000306788

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001