Functional clusters
Information
- Type InterPro
- Description Terpene cyclase-like 1, C-terminal domain
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Brassica carinata | ChrB07 | 5 | CH_bca_1215 | 3 | 5 | 0.0000373785 |
| Brassica oleracea | C7 | 5 | CH_bol_800 | 3 | 16 | 0.000501429 |
| Camellia sinensis var. sinensis | Chr14 | 5 | CH_camsi_598 | 6 | 72 | 0.000000623589 |
| Cannabis sativa | NC_044374.1 | 5 | CH_cansat_121 | 7 | 41 | 0.000000000364317 |
| Cannabis sativa | NC_044374.1 | 5 | CH_cansat_173 | 4 | 4 | 0.0000000267287 |
| Cannabis sativa | NC_044376.1 | 5 | CH_cansat_234 | 4 | 6 | 0.000000400335 |
| Cannabis sativa | NC_044371.1 | 5 | CH_cansat_488 | 3 | 5 | 0.000290312 |
| Corylus avellana | 1 | 5 | CH_cav_65 | 6 | 8 | 0.0000000000000309681 |
| Coffea canephora | chr2 | 5 | CH_ccan_700 | 3 | 40 | 0.00075081 |
| Carya illinoinensis | Chr10 | 5 | CH_cil_633 | 3 | 3 | 0.000168625 |
| Citrullus lanatus | CG_Chr10 | 5 | CH_cla_161 | 3 | 4 | 0.0000103849 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2858 | 5 | CH_cqu_795 | 4 | 29 | 0.000205068 |
| Daucus carota | DCARv2_Chr1 | 5 | CH_dca_275 | 3 | 3 | 0.00000174505 |
| Davidia involucrata | GWHABJS00000017 | 5 | CH_din_368 | 5 | 60 | 0.00000511364 |
| Durio zibethinus | NW_019168270.1 | 5 | CH_dzi_199 | 4 | 6 | 0.000000160957 |
| Durio zibethinus | NW_019167982.1 | 5 | CH_dzi_556 | 3 | 7 | 0.00055823 |
| Erigeron canadensis | Conyza_canadensis_scaffold:1 | 5 | CH_eca_583 | 3 | 4 | 0.0000862112 |
| Erigeron canadensis | Conyza_canadensis_scaffold:9 | 5 | CH_eca_733 | 3 | 6 | 0.000430558 |
| Erythranthe guttata | scaffold_13 | 5 | CH_egut_200 | 5 | 9 | 0.00000000213901 |
| Fragaria vesca | Fvb3 | 5 | CH_fve_130 | 7 | 23 | 0.00000000000820527 |
| Gossypium hirsutum | A10 | 5 | CH_ghi_448 | 4 | 4 | 0.0000000732768 |
| Gossypium hirsutum | D09 | 5 | CH_ghi_449 | 4 | 4 | 0.0000000732768 |
| Gossypium hirsutum | A09 | 5 | CH_ghi_579 | 4 | 6 | 0.00000109743 |
| Gossypium hirsutum | A01 | 5 | CH_ghi_837 | 3 | 3 | 0.000075184 |
| Glycine max | Gm12 | 5 | CH_gma_367 | 4 | 15 | 0.000000406649 |
| Gossypium raimondii | Chr11 | 5 | CH_gra_655 | 3 | 6 | 0.000786241 |
| Helianthus annuus | HanXRQChr03 | 5 | CH_han_870 | 3 | 3 | 0.0000933253 |
| Lactuca sativa | Lsat_1_v8_lg_9 | 5 | CH_lsa_747 | 3 | 5 | 0.000307517 |
| Magnolia biondii | Chr18 | 5 | CH_mbi_606 | 5 | 36 | 0.00000429539 |
| Malus domestica | Chr11 | 5 | CH_mdo_593 | 5 | 46 | 0.00000137861 |
| Malus domestica | Chr10 | 5 | CH_mdo_914 | 3 | 6 | 0.000112051 |
| Manihot esculenta | Chromosome15 | 5 | CH_mes_341 | 4 | 7 | 0.000000976199 |
| Manihot esculenta | Chromosome16 | 5 | CH_mes_459 | 3 | 3 | 0.0000305166 |
| Nicotiana tabacum | Nitab4.5_0002418 | 5 | CH_nta_303 | 2 | 2 | 0.000658364 |
| Prunus persica | Pp04 | 5 | CH_ppe_792 | 3 | 6 | 0.000545701 |
| Populus trichocarpa | Chr19 | 5 | CH_ptr_121 | 6 | 9 | 0.000000000000215674 |
| Populus trichocarpa | Chr19 | 5 | CH_ptr_248 | 4 | 4 | 0.00000000732885 |
| Phaseolus vulgaris | Chr05 | 5 | CH_pvu_241 | 4 | 5 | 0.000000104348 |
| Rosa chinensis | RcHm_v2.0_Chr3 | 5 | CH_rch_1004 | 4 | 14 | 0.0000400168 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 5 | CH_rch_1354 | 3 | 5 | 0.000438589 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 5 | CH_rch_419 | 6 | 22 | 0.0000000023358 |
| Rhododendron simsii | chr02 | 5 | CH_rsi_909 | 3 | 6 | 0.00040849 |
| Rhododendron simsii | chr04 | 5 | CH_rsi_97 | 9 | 23 | 2.38836e-18 |
| Striga asiatica | scaffold81 | 5 | CH_sas_81 | 3 | 3 | 0.00000398924 |
| Salvia bowleyana | GWHASIU00000004 | 5 | CH_sbo_447 | 3 | 3 | 0.0000221709 |
| Solanum pennellii | Spenn-ch02 | 5 | CH_spe_667 | 3 | 6 | 0.000136352 |
| Tarenaya hassleriana | NW_010966092.1 | 5 | CH_tha_213 | 3 | 5 | 0.00012946 |
| Tripterygium wilfordii | NC_052238.1 | 5 | CH_twi_238 | 4 | 7 | 0.00000223953 |
| Tripterygium wilfordii | NC_052247.1 | 5 | CH_twi_357 | 3 | 3 | 0.0000575379 |
| Tripterygium wilfordii | NC_052233.1 | 5 | CH_twi_358 | 3 | 3 | 0.0000575379 |
| Brassica carinata | ChrB07 | 6 | CH_bca_1215 | 3 | 5 | 0.0000373785 |
| Brassica oleracea | C7 | 6 | CH_bol_800 | 3 | 16 | 0.000501429 |
| Camellia sinensis var. sinensis | Chr14 | 6 | CH_camsi_598 | 6 | 72 | 0.000000623589 |
| Cannabis sativa | NC_044374.1 | 6 | CH_cansat_121 | 7 | 41 | 0.000000000364317 |
| Cannabis sativa | NC_044374.1 | 6 | CH_cansat_173 | 4 | 4 | 0.0000000267287 |
| Cannabis sativa | NC_044376.1 | 6 | CH_cansat_234 | 4 | 6 | 0.000000400335 |
| Cannabis sativa | NC_044371.1 | 6 | CH_cansat_488 | 3 | 5 | 0.000290312 |
| Corylus avellana | 1 | 6 | CH_cav_65 | 6 | 8 | 0.0000000000000309681 |
| Coffea canephora | chr2 | 6 | CH_ccan_700 | 3 | 40 | 0.00075081 |
| Carya illinoinensis | Chr10 | 6 | CH_cil_633 | 3 | 3 | 0.000168625 |
| Citrullus lanatus | CG_Chr10 | 6 | CH_cla_161 | 3 | 4 | 0.0000103849 |
| Cucumis melo | chr06 | 6 | CH_cme_124 | 5 | 14 | 0.00000000459292 |
| Cucumis melo | chr12 | 6 | CH_cme_151 | 4 | 6 | 0.0000000646763 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2858 | 6 | CH_cqu_795 | 4 | 29 | 0.000205068 |
| Daucus carota | DCARv2_Chr1 | 6 | CH_dca_275 | 3 | 3 | 0.00000174505 |
| Davidia involucrata | GWHABJS00000017 | 6 | CH_din_368 | 5 | 60 | 0.00000511364 |
| Durio zibethinus | NW_019168270.1 | 6 | CH_dzi_199 | 4 | 6 | 0.000000160957 |
| Durio zibethinus | NW_019167982.1 | 6 | CH_dzi_556 | 3 | 7 | 0.00055823 |
| Erigeron canadensis | Conyza_canadensis_scaffold:1 | 6 | CH_eca_583 | 3 | 4 | 0.0000862112 |
| Erigeron canadensis | Conyza_canadensis_scaffold:9 | 6 | CH_eca_733 | 3 | 6 | 0.000430558 |
| Erythranthe guttata | scaffold_13 | 6 | CH_egut_200 | 5 | 9 | 0.00000000213901 |
| Fragaria vesca | Fvb3 | 6 | CH_fve_130 | 7 | 23 | 0.00000000000820527 |
| Gossypium hirsutum | A10 | 6 | CH_ghi_448 | 4 | 4 | 0.0000000732768 |
| Gossypium hirsutum | D09 | 6 | CH_ghi_449 | 4 | 4 | 0.0000000732768 |
| Gossypium hirsutum | A09 | 6 | CH_ghi_579 | 4 | 6 | 0.00000109743 |
| Gossypium hirsutum | A01 | 6 | CH_ghi_837 | 3 | 3 | 0.000075184 |
| Glycine max | Gm12 | 6 | CH_gma_367 | 4 | 15 | 0.000000406649 |
| Gossypium raimondii | Chr11 | 6 | CH_gra_655 | 3 | 6 | 0.000786241 |
| Helianthus annuus | HanXRQChr03 | 6 | CH_han_870 | 3 | 3 | 0.0000933253 |
| Lactuca sativa | Lsat_1_v8_lg_9 | 6 | CH_lsa_747 | 3 | 5 | 0.000307517 |
| Magnolia biondii | Chr18 | 6 | CH_mbi_606 | 5 | 36 | 0.00000429539 |
| Malus domestica | Chr11 | 6 | CH_mdo_593 | 5 | 46 | 0.00000137861 |
| Malus domestica | Chr10 | 6 | CH_mdo_914 | 3 | 6 | 0.000112051 |
| Manihot esculenta | Chromosome15 | 6 | CH_mes_341 | 4 | 7 | 0.000000976199 |
| Manihot esculenta | Chromosome16 | 6 | CH_mes_459 | 3 | 3 | 0.0000305166 |
| Nicotiana tabacum | Nitab4.5_0002418 | 6 | CH_nta_303 | 2 | 2 | 0.000658364 |
| Prunus persica | Pp04 | 6 | CH_ppe_792 | 3 | 6 | 0.000545701 |
| Populus trichocarpa | Chr19 | 6 | CH_ptr_121 | 6 | 9 | 0.000000000000215674 |
| Populus trichocarpa | Chr19 | 6 | CH_ptr_248 | 4 | 4 | 0.00000000732885 |
| Phaseolus vulgaris | Chr05 | 6 | CH_pvu_241 | 4 | 5 | 0.000000104348 |
| Rosa chinensis | RcHm_v2.0_Chr3 | 6 | CH_rch_1004 | 4 | 14 | 0.0000400168 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 6 | CH_rch_1354 | 3 | 5 | 0.000438589 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 6 | CH_rch_419 | 6 | 22 | 0.0000000023358 |
| Rhododendron simsii | chr02 | 6 | CH_rsi_909 | 3 | 6 | 0.00040849 |
| Rhododendron simsii | chr04 | 6 | CH_rsi_97 | 9 | 23 | 2.38836e-18 |
| Striga asiatica | scaffold81 | 6 | CH_sas_81 | 3 | 3 | 0.00000398924 |
| Salvia bowleyana | GWHASIU00000004 | 6 | CH_sbo_447 | 3 | 3 | 0.0000221709 |
| Solanum pennellii | Spenn-ch02 | 6 | CH_spe_667 | 3 | 6 | 0.000136352 |
| Tarenaya hassleriana | NW_010966092.1 | 6 | CH_tha_213 | 3 | 5 | 0.00012946 |
| Tripterygium wilfordii | NC_052238.1 | 6 | CH_twi_238 | 4 | 7 | 0.00000223953 |
| Tripterygium wilfordii | NC_052247.1 | 6 | CH_twi_357 | 3 | 3 | 0.0000575379 |
| Tripterygium wilfordii | NC_052233.1 | 6 | CH_twi_358 | 3 | 3 | 0.0000575379 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |