Functional clusters
Information
- Type InterPro
- Description ATP-binding cassette transporter, PDR-like subfamily G, domain 2
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr1 | 5 | CH_acertr_372 | 3 | 5 | 0.00000149066 |
| Arabidopsis lyrata | scaffold_7 | 5 | CH_aly_324 | 3 | 3 | 0.00000237877 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_12 | 5 | CH_amhyb_355 | 3 | 21 | 0.000493264 |
| Arabidopsis thaliana | Chr4 | 5 | CH_ath_125 | 4 | 5 | 0.000000000481414 |
| Coffea canephora | chr2 | 5 | CH_ccan_75 | 5 | 61 | 0.0000000000997302 |
| Daucus carota | DCARv2_Chr7 | 5 | CH_dca_363 | 3 | 3 | 0.0000222951 |
| Daucus carota | DCARv2_Chr3 | 5 | CH_dca_643 | 3 | 6 | 0.000445028 |
| Daucus carota | DCARv2_Chr2 | 5 | CH_dca_89 | 5 | 5 | 0.000000000014739 |
| Gossypium hirsutum | A07 | 5 | CH_ghi_768 | 3 | 3 | 0.0000347675 |
| Lactuca sativa | Lsat_1_v8_lg_5 | 5 | CH_lsa_265 | 5 | 12 | 0.00000000588647 |
| Magnolia biondii | Chr01 | 5 | CH_mbi_229 | 6 | 43 | 0.000000000294306 |
| Malus domestica | Chr09 | 5 | CH_mdo_266 | 5 | 9 | 0.000000000542779 |
| Manihot esculenta | Chromosome11 | 5 | CH_mes_245 | 4 | 4 | 0.00000000864148 |
| Medicago truncatula | chr2 | 5 | CH_mtr_951 | 3 | 4 | 0.0000411047 |
| Oryza sativa ssp. japonica | chr01 | 5 | CH_osa_315 | 3 | 3 | 0.00000119657 |
| Petunia axillaris | Peaxi162Scf00357 | 5 | CH_pax_125 | 4 | 4 | 0.00000000404993 |
| Prunus persica | Pp06 | 5 | CH_ppe_265 | 5 | 10 | 0.00000000383726 |
| Prunus persica | Pp03 | 5 | CH_ppe_525 | 3 | 3 | 0.0000217028 |
| Prunus persica | Pp01 | 5 | CH_ppe_526 | 3 | 3 | 0.0000217028 |
| Pisum sativum | chr5LG3 | 5 | CH_psa_295 | 3 | 3 | 0.00000148572 |
| Papaver somniferum | NC_039368.1 | 5 | CH_pso_1158 | 3 | 12 | 0.000488997 |
| Populus trichocarpa | Chr01 | 5 | CH_ptr_242 | 4 | 4 | 0.00000000513019 |
| Quercus lobata | 12 | 5 | CH_qlo_1159 | 3 | 3 | 0.0000261696 |
| Rhododendron simsii | chr11 | 5 | CH_rsi_94 | 9 | 20 | 1.43396e-18 |
| Sechium edule | LG02 | 5 | CH_sed_276 | 3 | 4 | 0.0000170954 |
| Sequoiadendron giganteum | chr7 | 5 | CH_sgi_861 | 5 | 10 | 0.00000000697936 |
| Solanum pennellii | Spenn-ch05 | 5 | CH_spe_184 | 4 | 4 | 0.00000000233779 |
| Theobroma cacao | Chromosome_4 | 5 | CH_tca_450 | 3 | 3 | 0.0000142497 |
| Theobroma cacao | Chromosome_9 | 5 | CH_tca_451 | 3 | 3 | 0.0000142497 |
| Theobroma cacao | Chromosome_6 | 5 | CH_tca_571 | 3 | 5 | 0.00014233 |
| Vaccinium macrocarpon | chr12_Vaccinium_macrocarpon_Stevens_v1 | 5 | CH_vma_70 | 7 | 15 | 0.000000000000851522 |
| Acer truncatum | chr1 | 6 | CH_acertr_372 | 3 | 5 | 0.00000149066 |
| Arabidopsis lyrata | scaffold_7 | 6 | CH_aly_324 | 3 | 3 | 0.00000237877 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_12 | 6 | CH_amhyb_355 | 3 | 21 | 0.000493264 |
| Arabidopsis thaliana | Chr4 | 6 | CH_ath_125 | 4 | 5 | 0.000000000481414 |
| Coffea canephora | chr2 | 6 | CH_ccan_75 | 5 | 61 | 0.0000000000997302 |
| Daucus carota | DCARv2_Chr7 | 6 | CH_dca_363 | 3 | 3 | 0.0000222951 |
| Daucus carota | DCARv2_Chr3 | 6 | CH_dca_643 | 3 | 6 | 0.000445028 |
| Daucus carota | DCARv2_Chr2 | 6 | CH_dca_89 | 5 | 5 | 0.000000000014739 |
| Gossypium hirsutum | A07 | 6 | CH_ghi_768 | 3 | 3 | 0.0000347675 |
| Lactuca sativa | Lsat_1_v8_lg_5 | 6 | CH_lsa_265 | 5 | 12 | 0.00000000588647 |
| Magnolia biondii | Chr01 | 6 | CH_mbi_229 | 6 | 43 | 0.000000000294306 |
| Malus domestica | Chr09 | 6 | CH_mdo_266 | 5 | 9 | 0.000000000542779 |
| Manihot esculenta | Chromosome11 | 6 | CH_mes_245 | 4 | 4 | 0.00000000864148 |
| Medicago truncatula | chr2 | 6 | CH_mtr_951 | 3 | 4 | 0.0000411047 |
| Oryza sativa ssp. japonica | chr01 | 6 | CH_osa_315 | 3 | 3 | 0.00000119657 |
| Petunia axillaris | Peaxi162Scf00357 | 6 | CH_pax_125 | 4 | 4 | 0.00000000404993 |
| Prunus persica | Pp06 | 6 | CH_ppe_265 | 5 | 10 | 0.00000000383726 |
| Prunus persica | Pp03 | 6 | CH_ppe_525 | 3 | 3 | 0.0000217028 |
| Prunus persica | Pp01 | 6 | CH_ppe_526 | 3 | 3 | 0.0000217028 |
| Pisum sativum | chr5LG3 | 6 | CH_psa_295 | 3 | 3 | 0.00000148572 |
| Papaver somniferum | NC_039368.1 | 6 | CH_pso_1158 | 3 | 12 | 0.000488997 |
| Populus trichocarpa | Chr01 | 6 | CH_ptr_242 | 4 | 4 | 0.00000000513019 |
| Quercus lobata | 12 | 6 | CH_qlo_1159 | 3 | 3 | 0.0000261696 |
| Rhododendron simsii | chr11 | 6 | CH_rsi_94 | 9 | 20 | 1.43396e-18 |
| Sechium edule | LG02 | 6 | CH_sed_276 | 3 | 4 | 0.0000170954 |
| Sequoiadendron giganteum | chr7 | 6 | CH_sgi_861 | 5 | 10 | 0.00000000697936 |
| Solanum pennellii | Spenn-ch05 | 6 | CH_spe_184 | 4 | 4 | 0.00000000233779 |
| Theobroma cacao | Chromosome_4 | 6 | CH_tca_450 | 3 | 3 | 0.0000142497 |
| Theobroma cacao | Chromosome_9 | 6 | CH_tca_451 | 3 | 3 | 0.0000142497 |
| Theobroma cacao | Chromosome_6 | 6 | CH_tca_571 | 3 | 5 | 0.00014233 |
| Vaccinium macrocarpon | chr12_Vaccinium_macrocarpon_Stevens_v1 | 6 | CH_vma_70 | 7 | 15 | 0.000000000000851522 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |