Functional clusters
Information
- Type InterPro
- Description Pentacotripeptide-repeat region of PRORP
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Amborella trichopoda | AmTr_v1.0_scaffold00095 | 5 | CH_atr_442 | 3 | 5 | 0.000167441 |
| Brassica oleracea | C1 | 5 | CH_bol_572 | 3 | 6 | 0.0000736565 |
| Cucumis sativus L. | chr3 | 5 | CH_csa_172 | 4 | 5 | 0.000000077219 |
| Medicago truncatula | chr2 | 5 | CH_mtr_1367 | 3 | 7 | 0.000687128 |
| Pisum sativum | chr1LG6 | 5 | CH_psa_500 | 3 | 4 | 0.000106788 |
| Trifolium pratense | Tp57577_TGAC_v2_scaf_215 | 5 | CH_tpr_208 | 4 | 4 | 0.0000000859514 |
| Amborella trichopoda | AmTr_v1.0_scaffold00095 | 6 | CH_atr_442 | 3 | 5 | 0.000167441 |
| Brassica oleracea | C1 | 6 | CH_bol_572 | 3 | 6 | 0.0000736565 |
| Cucumis melo | chr04 | 6 | CH_cme_335 | 3 | 6 | 0.000177318 |
| Cucumis sativus L. | chr3 | 6 | CH_csa_172 | 4 | 5 | 0.000000077219 |
| Medicago truncatula | chr2 | 6 | CH_mtr_1367 | 3 | 7 | 0.000687128 |
| Pisum sativum | chr1LG6 | 6 | CH_psa_500 | 3 | 4 | 0.000106788 |
| Trifolium pratense | Tp57577_TGAC_v2_scaf_215 | 6 | CH_tpr_208 | 4 | 4 | 0.0000000859514 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |