Functional clusters
Information
- Type InterPro
- Description NTF2-like domain superfamily
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Camellia sinensis var. sinensis | Chr5 | 5 | CH_camsi_739 | 4 | 8 | 0.00000427572 |
| Citrus clementina | scaffold_3 | 5 | CH_ccl_383 | 4 | 7 | 0.00000158432 |
| Carpinus fangiana | Cfa07 | 5 | CH_cfa_300 | 4 | 8 | 0.00000249199 |
| Helianthus annuus | HanXRQChr02 | 5 | CH_han_272 | 5 | 6 | 0.000000000383016 |
| Lactuca sativa | Lsat_1_v8_lg_1 | 5 | CH_lsa_646 | 3 | 4 | 0.000123091 |
| Magnolia biondii | Chr06 | 5 | CH_mbi_1061 | 3 | 6 | 0.000350396 |
| Olea europaea | chr7 | 5 | CH_oeu_263 | 3 | 3 | 0.000019212 |
| Prunus persica | Pp08 | 5 | CH_ppe_335 | 5 | 14 | 0.0000000929116 |
| Quercus lobata | CM012294 | 5 | CH_qlo_1078 | 4 | 11 | 0.0000079875 |
| Rosa chinensis | RcHm_v2.0_Chr6 | 5 | CH_rch_123 | 9 | 25 | 5.00772e-18 |
| Salvia bowleyana | GWHASIU00000005 | 5 | CH_sbo_753 | 4 | 48 | 0.000683243 |
| Sechium edule | LG13 | 5 | CH_sed_307 | 3 | 3 | 0.0000545123 |
| Sequoiadendron giganteum | chr7 | 5 | CH_sgi_2171 | 3 | 5 | 0.000175595 |
| Sequoiadendron giganteum | chr4 | 5 | CH_sgi_2393 | 3 | 5 | 0.000438656 |
| Solanum tuberosum | ST4.03ch04 | 5 | CH_stu_646 | 3 | 4 | 0.0000859177 |
| Trochodendron aralioides | group5 | 5 | CH_tar_224 | 4 | 4 | 0.0000000534011 |
| Vitis vinifera | chr18 | 5 | CH_vvi_453 | 3 | 3 | 0.0000253852 |
| Camellia sinensis var. sinensis | Chr5 | 6 | CH_camsi_739 | 4 | 8 | 0.00000427572 |
| Citrus clementina | scaffold_3 | 6 | CH_ccl_383 | 4 | 7 | 0.00000158432 |
| Carpinus fangiana | Cfa07 | 6 | CH_cfa_300 | 4 | 8 | 0.00000249199 |
| Helianthus annuus | HanXRQChr02 | 6 | CH_han_272 | 5 | 6 | 0.000000000383016 |
| Lactuca sativa | Lsat_1_v8_lg_1 | 6 | CH_lsa_646 | 3 | 4 | 0.000123091 |
| Magnolia biondii | Chr06 | 6 | CH_mbi_1061 | 3 | 6 | 0.000350396 |
| Olea europaea | chr7 | 6 | CH_oeu_263 | 3 | 3 | 0.000019212 |
| Prunus persica | Pp08 | 6 | CH_ppe_335 | 5 | 14 | 0.0000000929116 |
| Quercus lobata | CM012294 | 6 | CH_qlo_1078 | 4 | 11 | 0.0000079875 |
| Rosa chinensis | RcHm_v2.0_Chr6 | 6 | CH_rch_123 | 9 | 25 | 5.00772e-18 |
| Salvia bowleyana | GWHASIU00000005 | 6 | CH_sbo_753 | 4 | 48 | 0.000683243 |
| Sechium edule | LG13 | 6 | CH_sed_307 | 3 | 3 | 0.0000545123 |
| Sequoiadendron giganteum | chr7 | 6 | CH_sgi_2171 | 3 | 5 | 0.000175595 |
| Sequoiadendron giganteum | chr4 | 6 | CH_sgi_2393 | 3 | 5 | 0.000438656 |
| Solanum tuberosum | ST4.03ch04 | 6 | CH_stu_646 | 3 | 4 | 0.0000859177 |
| Trochodendron aralioides | group5 | 6 | CH_tar_224 | 4 | 4 | 0.0000000534011 |
| Vitis vinifera | chr18 | 6 | CH_vvi_453 | 3 | 3 | 0.0000253852 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |