Functional clusters
Information
- Type InterPro
- Description Topless family
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr7 | 5 | CH_acertr_292 | 5 | 39 | 0.000000136038 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_1 | 5 | CH_amhyb_391 | 2 | 2 | 0.000505051 |
| Beta vulgaris | Chr2_EL10_PGA_scaffold6 | 5 | CH_bvu_531 | 2 | 2 | 0.000827917 |
| Camellia sinensis var. sinensis | Chr14 | 5 | CH_camsi_165 | 6 | 11 | 0.000000000000212404 |
| Camellia sinensis var. sinensis | Contig1143 | 5 | CH_camsi_867 | 3 | 4 | 0.0000223351 |
| Coffea canephora | chr7 | 5 | CH_ccan_32 | 6 | 40 | 0.000000000000127276 |
| Coffea canephora | chr8 | 5 | CH_ccan_6 | 8 | 80 | 2.43269e-18 |
| Corchorus olitorius | AWUE01022490.1 | 5 | CH_col_227 | 2 | 2 | 0.000876296 |
| Cucumis sativus L. | chr4 | 5 | CH_csa_500 | 2 | 2 | 0.000834759 |
| Davidia involucrata | GWHABJS00000003 | 5 | CH_din_390 | 3 | 5 | 0.0000107261 |
| Eucalyptus grandis | Chr03 | 5 | CH_egr_35 | 17 | 56 | 3.1272e-38 |
| Fragaria vesca | Fvb2 | 5 | CH_fve_172 | 4 | 4 | 0.00000000012881 |
| Lonicera japonica | GWHAAZE00000093 | 5 | CH_lonja_564 | 3 | 3 | 0.00000195829 |
| Lactuca sativa | Lsat_1_v8_lg_5 | 5 | CH_lsa_215 | 4 | 4 | 0.000000000556152 |
| Magnolia biondii | Chr14 | 5 | CH_mbi_357 | 3 | 3 | 0.0000000353808 |
| Malus domestica | Chr00 | 5 | CH_mdo_319 | 5 | 18 | 0.00000000445426 |
| Medicago truncatula | chr2 | 5 | CH_mtr_750 | 3 | 3 | 0.00000288669 |
| Medicago truncatula | chr7 | 5 | CH_mtr_980 | 3 | 6 | 0.0000576848 |
| Olea europaea | chr9 | 5 | CH_oeu_183 | 3 | 3 | 0.000000705222 |
| Quercus lobata | CM012294 | 5 | CH_qlo_433 | 5 | 5 | 0.00000000000632924 |
| Quercus lobata | 5 | 5 | CH_qlo_816 | 4 | 6 | 0.000000146938 |
| Quercus lobata | 4 | 5 | CH_qlo_873 | 4 | 7 | 0.00000034267 |
| Quercus lobata | 5 | 5 | CH_qlo_935 | 5 | 30 | 0.000000889808 |
| Sechium edule | LG11 | 5 | CH_sed_104 | 4 | 6 | 0.0000000020583 |
| Sequoiadendron giganteum | chr8 | 5 | CH_sgi_1361 | 3 | 3 | 0.00000242069 |
| Sequoiadendron giganteum | chr9 | 5 | CH_sgi_1456 | 3 | 4 | 0.00000968004 |
| Solanum lycopersicum | SL4.0ch03 | 5 | CH_sly_475 | 3 | 6 | 0.00000867743 |
| Solanum pennellii | Spenn-ch03 | 5 | CH_spe_76 | 5 | 5 | 0.000000000000037785 |
| Solanum tuberosum | ST4.03ch03 | 5 | CH_stu_113 | 5 | 5 | 0.00000000000000651799 |
| Theobroma cacao | Chromosome_5 | 5 | CH_tca_90 | 6 | 9 | 0.0000000000000119537 |
| Vaccinium macrocarpon | chr4_Vaccinium_macrocarpon_Stevens_v1 | 5 | CH_vma_310 | 3 | 3 | 0.00000370452 |
| Vanilla planifolia | CM028150.1 | 5 | CH_vpl_346 | 3 | 11 | 0.0000472382 |
| Vitis vinifera | chr4 | 5 | CH_vvi_86 | 6 | 7 | 1.85296e-16 |
| Acer truncatum | chr7 | 6 | CH_acertr_292 | 5 | 39 | 0.000000136038 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_1 | 6 | CH_amhyb_391 | 2 | 2 | 0.000505051 |
| Beta vulgaris | Chr2_EL10_PGA_scaffold6 | 6 | CH_bvu_531 | 2 | 2 | 0.000827917 |
| Camellia sinensis var. sinensis | Chr14 | 6 | CH_camsi_165 | 6 | 11 | 0.000000000000212404 |
| Camellia sinensis var. sinensis | Contig1143 | 6 | CH_camsi_867 | 3 | 4 | 0.0000223351 |
| Coffea canephora | chr7 | 6 | CH_ccan_32 | 6 | 40 | 0.000000000000127276 |
| Coffea canephora | chr8 | 6 | CH_ccan_6 | 8 | 80 | 2.43269e-18 |
| Corchorus olitorius | AWUE01022490.1 | 6 | CH_col_227 | 2 | 2 | 0.000876296 |
| Cucumis sativus L. | chr4 | 6 | CH_csa_500 | 2 | 2 | 0.000834759 |
| Davidia involucrata | GWHABJS00000003 | 6 | CH_din_390 | 3 | 5 | 0.0000107261 |
| Eucalyptus grandis | Chr03 | 6 | CH_egr_35 | 17 | 56 | 3.1272e-38 |
| Fragaria x ananassa | Fvb2-4 | 6 | CH_fan_205 | 4 | 4 | 0.000000000995182 |
| Fragaria x ananassa | Fvb2-3 | 6 | CH_fan_206 | 4 | 4 | 0.000000000995182 |
| Fragaria x ananassa | Fvb6-3 | 6 | CH_fan_257 | 4 | 6 | 0.0000000149206 |
| Fragaria x ananassa | Fvb2-2 | 6 | CH_fan_532 | 3 | 3 | 0.00000336138 |
| Fragaria x ananassa | Fvb2-1 | 6 | CH_fan_649 | 3 | 4 | 0.0000134424 |
| Fragaria vesca | Fvb2 | 6 | CH_fve_172 | 4 | 4 | 0.00000000012881 |
| Lonicera japonica | GWHAAZE00000093 | 6 | CH_lonja_564 | 3 | 3 | 0.00000195829 |
| Lactuca sativa | Lsat_1_v8_lg_5 | 6 | CH_lsa_215 | 4 | 4 | 0.000000000556152 |
| Magnolia biondii | Chr14 | 6 | CH_mbi_357 | 3 | 3 | 0.0000000353808 |
| Malus domestica | Chr00 | 6 | CH_mdo_319 | 5 | 18 | 0.00000000445426 |
| Medicago truncatula | chr2 | 6 | CH_mtr_750 | 3 | 3 | 0.00000288669 |
| Medicago truncatula | chr7 | 6 | CH_mtr_980 | 3 | 6 | 0.0000576848 |
| Olea europaea | chr9 | 6 | CH_oeu_183 | 3 | 3 | 0.000000705222 |
| Quercus lobata | CM012294 | 6 | CH_qlo_433 | 5 | 5 | 0.00000000000632924 |
| Quercus lobata | 5 | 6 | CH_qlo_816 | 4 | 6 | 0.000000146938 |
| Quercus lobata | 4 | 6 | CH_qlo_873 | 4 | 7 | 0.00000034267 |
| Quercus lobata | 5 | 6 | CH_qlo_935 | 5 | 30 | 0.000000889808 |
| Sechium edule | LG11 | 6 | CH_sed_104 | 4 | 6 | 0.0000000020583 |
| Sequoiadendron giganteum | chr8 | 6 | CH_sgi_1361 | 3 | 3 | 0.00000242069 |
| Sequoiadendron giganteum | chr9 | 6 | CH_sgi_1456 | 3 | 4 | 0.00000968004 |
| Solanum lycopersicum | SL4.0ch03 | 6 | CH_sly_475 | 3 | 6 | 0.00000867743 |
| Solanum pennellii | Spenn-ch03 | 6 | CH_spe_76 | 5 | 5 | 0.000000000000037785 |
| Solanum tuberosum | ST4.03ch03 | 6 | CH_stu_113 | 5 | 5 | 0.00000000000000651799 |
| Theobroma cacao | Chromosome_5 | 6 | CH_tca_90 | 6 | 9 | 0.0000000000000119537 |
| Vaccinium macrocarpon | chr4_Vaccinium_macrocarpon_Stevens_v1 | 6 | CH_vma_310 | 3 | 3 | 0.00000370452 |
| Vanilla planifolia | CM028150.1 | 6 | CH_vpl_346 | 3 | 11 | 0.0000472382 |
| Vitis vinifera | chr4 | 6 | CH_vvi_86 | 6 | 7 | 1.85296e-16 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |