Functional clusters
Information
- Type InterPro
- Description Nucleoporin Nup186/Nup192/Nup205
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr1 | 5 | CH_acertr_661 | 3 | 16 | 0.0000833718 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_9 | 5 | CH_amhyb_469 | 2 | 2 | 0.000841751 |
| Amborella trichopoda | AmTr_v1.0_scaffold00005 | 5 | CH_atr_584 | 2 | 2 | 0.000476644 |
| Carya illinoinensis | Chr03 | 5 | CH_cil_864 | 2 | 2 | 0.000929742 |
| Carica papaya | supercontig_75 | 5 | CH_cpa_213 | 3 | 8 | 0.0000030355 |
| Fragaria vesca | Fvb6 | 5 | CH_fve_834 | 2 | 2 | 0.000883652 |
| Hydrangea macrophylla | Hma1.2p1_0018F.1 | 5 | CH_hma_427 | 2 | 2 | 0.000111086 |
| Olea europaea | chr9 | 5 | CH_oeu_677 | 2 | 2 | 0.000800683 |
| Oryza sativa ssp. japonica | chr02 | 5 | CH_osa_717 | 2 | 2 | 0.000528123 |
| Papaver somniferum | NC_039365.1 | 5 | CH_pso_1258 | 2 | 2 | 0.000811057 |
| Quercus lobata | CM012294 | 5 | CH_qlo_1714 | 2 | 2 | 0.000516289 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 5 | CH_rch_1195 | 3 | 13 | 0.000194664 |
| Sequoiadendron giganteum | chr8 | 5 | CH_sgi_1001 | 3 | 3 | 0.0000000355983 |
| Sapria himalayana | scaffold5_19632047 | 5 | CH_shi_162 | 3 | 6 | 0.000000196162 |
| Vanilla planifolia | CM028153.1 | 5 | CH_vpl_154 | 4 | 21 | 0.000000252985 |
| Acer truncatum | chr1 | 6 | CH_acertr_661 | 3 | 16 | 0.0000833718 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_9 | 6 | CH_amhyb_469 | 2 | 2 | 0.000841751 |
| Amborella trichopoda | AmTr_v1.0_scaffold00005 | 6 | CH_atr_584 | 2 | 2 | 0.000476644 |
| Carya illinoinensis | Chr03 | 6 | CH_cil_864 | 2 | 2 | 0.000929742 |
| Carica papaya | supercontig_75 | 6 | CH_cpa_213 | 3 | 8 | 0.0000030355 |
| Fragaria vesca | Fvb6 | 6 | CH_fve_834 | 2 | 2 | 0.000883652 |
| Hydrangea macrophylla | Hma1.2p1_0018F.1 | 6 | CH_hma_427 | 2 | 2 | 0.000111086 |
| Olea europaea | chr9 | 6 | CH_oeu_677 | 2 | 2 | 0.000800683 |
| Oryza sativa ssp. japonica | chr02 | 6 | CH_osa_717 | 2 | 2 | 0.000528123 |
| Papaver somniferum | NC_039365.1 | 6 | CH_pso_1258 | 2 | 2 | 0.000811057 |
| Quercus lobata | CM012294 | 6 | CH_qlo_1714 | 2 | 2 | 0.000516289 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 6 | CH_rch_1195 | 3 | 13 | 0.000194664 |
| Sequoiadendron giganteum | chr8 | 6 | CH_sgi_1001 | 3 | 3 | 0.0000000355983 |
| Sapria himalayana | scaffold5_19632047 | 6 | CH_shi_162 | 3 | 6 | 0.000000196162 |
| Vanilla planifolia | CM028153.1 | 6 | CH_vpl_154 | 4 | 21 | 0.000000252985 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |