Functional clusters
Information
- Type InterPro
- Description NYN domain, limkain-b1-type
Cluster overview
Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
---|---|---|---|---|---|---|
Arabidopsis lyrata | scaffold_8 | 5 | CH_aly_490 | 3 | 3 | 0.000181153 |
Arabidopsis thaliana | Chr3 | 5 | CH_ath_444 | 4 | 56 | 0.000124255 |
Arabidopsis thaliana | Chr3 | 5 | CH_ath_486 | 4 | 63 | 0.000201236 |
Brassica carinata | ChrB02 | 5 | CH_bca_2078 | 3 | 5 | 0.000859523 |
Brassica carinata | ChrC07 | 5 | CH_bca_890 | 4 | 7 | 0.00000285933 |
Brassica napus | C01 | 5 | CH_bna_1328 | 3 | 4 | 0.000433658 |
Brassica napus | C08 | 5 | CH_bna_542 | 4 | 5 | 0.000000533261 |
Brassica oleracea | C1 | 5 | CH_bol_707 | 3 | 4 | 0.000279789 |
Brassica rapa | A09 | 5 | CH_bra_312 | 3 | 3 | 0.0000233231 |
Capsicum annuum | PGAv.1.6.scaffold497 | 5 | CH_can_850 | 2 | 2 | 0.000826105 |
Cardamine hirsuta | Chr8 | 5 | CH_chi_127 | 5 | 5 | 0.0000000000168284 |
Helianthus annuus | HanXRQChr13 | 5 | CH_han_826 | 3 | 11 | 0.0000443082 |
Sapria himalayana | scaffold26_7557582 | 5 | CH_shi_546 | 2 | 2 | 0.000571804 |
Solanum pennellii | Spenn-ch02 | 5 | CH_spe_297 | 3 | 3 | 0.000000166188 |
Solanum tuberosum | ST4.03ch02 | 5 | CH_stu_198 | 4 | 4 | 0.0000000000847881 |
Arabidopsis lyrata | scaffold_8 | 6 | CH_aly_490 | 3 | 3 | 0.000181153 |
Arabidopsis thaliana | Chr3 | 6 | CH_ath_444 | 4 | 56 | 0.000124255 |
Arabidopsis thaliana | Chr3 | 6 | CH_ath_486 | 4 | 63 | 0.000201236 |
Brassica carinata | ChrB02 | 6 | CH_bca_2078 | 3 | 5 | 0.000859523 |
Brassica carinata | ChrC07 | 6 | CH_bca_890 | 4 | 7 | 0.00000285933 |
Brassica napus | C01 | 6 | CH_bna_1328 | 3 | 4 | 0.000433658 |
Brassica napus | C08 | 6 | CH_bna_542 | 4 | 5 | 0.000000533261 |
Brassica oleracea | C1 | 6 | CH_bol_707 | 3 | 4 | 0.000279789 |
Brassica rapa | A09 | 6 | CH_bra_312 | 3 | 3 | 0.0000233231 |
Capsicum annuum | PGAv.1.6.scaffold497 | 6 | CH_can_850 | 2 | 2 | 0.000826105 |
Cardamine hirsuta | Chr8 | 6 | CH_chi_127 | 5 | 5 | 0.0000000000168284 |
Helianthus annuus | HanXRQChr13 | 6 | CH_han_826 | 3 | 11 | 0.0000443082 |
Sapria himalayana | scaffold26_7557582 | 6 | CH_shi_546 | 2 | 2 | 0.000571804 |
Solanum pennellii | Spenn-ch02 | 6 | CH_spe_297 | 3 | 3 | 0.000000166188 |
Solanum tuberosum | ST4.03ch02 | 6 | CH_stu_198 | 4 | 4 | 0.0000000000847881 |
Functional Clusters Experiments
Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
---|---|---|---|---|---|---|---|
1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |