Functional clusters

Information

  • Type InterPro
  • Description Polyketide synthase, enoylreductase domain

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Aethionema arabicum LG-9 5 CH_aar_239 3 3 0.0000192279
Acer truncatum chr5 5 CH_acertr_511 4 17 0.0000507526
Arabidopsis lyrata scaffold_7 5 CH_aly_459 3 4 0.0000764126
Amborella trichopoda AmTr_v1.0_scaffold00013 5 CH_atr_439 3 5 0.000145609
Brassica carinata ChrC01 5 CH_bca_1640 3 7 0.000317295
Brassica napus C03 5 CH_bna_1348 3 7 0.000500649
Brassica oleracea C3 5 CH_bol_482 3 4 0.0000209937
Beta vulgaris Chr7_EL10_PGA_scaffold5 5 CH_bvu_285 3 3 0.00000996339
Camellia sinensis var. sinensis Chr4 5 CH_camsi_261 6 11 0.000000000068096
Cannabis sativa NC_044373.1 5 CH_cansat_137 6 21 0.00000000163186
Cannabis sativa NC_044373.1 5 CH_cansat_423 3 4 0.000141046
Cicer arietinum L. Ca_LG8_v3 5 CH_car_30 5 6 0.000000000162192
Corylus avellana 1 5 CH_cav_170 5 8 0.00000000291523
Chara braunii BFEA01000156 5 CH_cbr_305 2 2 0.000431562
Coffea canephora chr7 5 CH_ccan_14 8 77 1.12946e-16
Citrus clementina scaffold_3 5 CH_ccl_430 3 3 0.00000823676
Carpinus fangiana Cfa04 5 CH_cfa_286 4 5 0.00000162613
Cardamine hirsuta Chr7 5 CH_chi_394 3 3 0.00000817004
Carya illinoinensis Chr05 5 CH_cil_194 6 8 0.0000000000474697
Carya illinoinensis Chr13 5 CH_cil_712 3 3 0.000251727
Carya illinoinensis Chr14 5 CH_cil_713 3 3 0.000251727
Carica papaya supercontig_129 5 CH_cpa_50 5 6 0.0000000000569644
Chenopodium quinoa C_Quinoa_Scaffold_2081 5 CH_cqu_395 4 5 0.000000676322
Capsella rubella scaffold_7 5 CH_cru_388 3 3 0.0000208497
Daucus carota DCARv2_Chr1 5 CH_dca_449 3 3 0.0000752993
Daucus carota DCARv2_Chr1 5 CH_dca_450 3 3 0.0000752993
Durio zibethinus NW_019167893.1 5 CH_dzi_366 3 3 0.0000397677
Erigeron canadensis Conyza_canadensis_scaffold:1 5 CH_eca_664 3 5 0.000215403
Eucalyptus grandis Chr07 5 CH_egr_1001 4 6 0.0000285998
Eucalyptus grandis Chr11 5 CH_egr_321 7 7 0.0000000000000349916
Eutrema salsugineum scaffold_1 5 CH_esa_283 3 3 0.0000176058
Gossypium hirsutum D07 5 CH_ghi_283 5 5 0.000000000125065
Gossypium hirsutum A07 5 CH_ghi_468 4 4 0.000000115645
Gossypium hirsutum D07 5 CH_ghi_469 4 4 0.000000115645
Gossypium hirsutum A07 5 CH_ghi_692 4 8 0.00000806675
Gossypium raimondii Chr01 5 CH_gra_155 5 5 0.0000000000950483
Gossypium raimondii Chr01 5 CH_gra_308 4 6 0.00000123449
Helianthus annuus HanXRQChr07 5 CH_han_1165 3 5 0.000726976
Helianthus annuus HanXRQChr01 5 CH_han_364 5 9 0.0000000105133
Helianthus annuus HanXRQChr16 5 CH_han_503 4 5 0.000000393621
Lonicera japonica GWHAAZE00000008 5 CH_lonja_446 4 4 0.000000148409
Lactuca sativa Lsat_1_v8_lg_3 5 CH_lsa_642 3 3 0.000103973
Lactuca sativa Lsat_1_v8_lg_9 5 CH_lsa_794 3 4 0.000415465
Lactuca sativa Lsat_1_v8_lg_2 5 CH_lsa_94 8 16 0.00000000000000464061
Magnolia biondii Chr07 5 CH_mbi_619 3 3 0.00000626595
Manihot esculenta Chromosome02 5 CH_mes_161 6 8 0.00000000000848171
Manihot esculenta Chromosome13 5 CH_mes_298 4 4 0.000000157323
Manihot esculenta Chromosome13 5 CH_mes_299 4 4 0.000000157323
Manihot esculenta Chromosome12 5 CH_mes_300 4 4 0.000000157323
Marchantia polymorpha scaffold_32 5 CH_mpo_75 4 6 0.000000234666
Nelumbo nucifera chr1 5 CH_nnu_530 3 8 0.000393685
Oryza sativa ssp. japonica chr09 5 CH_osa_307 4 7 0.000000808238
Petunia axillaris Peaxi162Scf00616 5 CH_pax_501 3 4 0.000133401
Prunus persica Pp08 5 CH_ppe_136 7 8 0.0000000000000472998
Pisum sativum chr3LG5 5 CH_psa_483 3 4 0.0000596255
Papaver somniferum NC_039362.1 5 CH_pso_762 3 3 0.0000178358
Papaver somniferum NC_039363.1 5 CH_pso_763 3 3 0.0000178358
Papaver somniferum NC_039358.1 5 CH_pso_830 4 19 0.0000386745
Populus trichocarpa Chr01 5 CH_ptr_815 3 5 0.000980183
Phaseolus vulgaris Chr02 5 CH_pvu_232 4 4 0.0000000785935
Quercus lobata 9 5 CH_qlo_1380 3 3 0.000143903
Quercus lobata 9 5 CH_qlo_355 7 11 0.000000000000213737
Rosa chinensis RcHm_v2.0_Chr6 5 CH_rch_106 9 12 2.19207e-19
Rosa chinensis RcHm_v2.0_Chr5 5 CH_rch_1413 3 4 0.000617469
Rhododendron simsii chr10 5 CH_rsi_109 8 10 2.97363e-17
Rhododendron simsii chr01 5 CH_rsi_420 4 4 0.000000170822
Striga asiatica scaffold108 5 CH_sas_157 4 17 0.000114065
Striga asiatica scaffold1 5 CH_sas_205 3 5 0.000455074
Striga asiatica scaffold275 5 CH_sas_28 5 9 0.00000000627979
Salix brachista GWHAAZH00000016 5 CH_sbr_241 4 4 0.0000000760245
Salix brachista GWHAAZH00000009 5 CH_sbr_679 3 5 0.000633765
Simmondsia chinensis GWHAASQ00000024 5 CH_sci_225 3 3 0.0000123968
Simmondsia chinensis GWHAASQ00000016 5 CH_sci_499 4 40 0.000802821
Sequoiadendron giganteum chr3 5 CH_sgi_1111 4 5 0.000000175498
Sequoiadendron giganteum chr5 5 CH_sgi_976 4 4 0.0000000351258
Solanum lycopersicum SL4.0ch11 5 CH_sly_464 5 38 0.00000742763
Schrenkiella parvula ch7-6 5 CH_spa_192 3 3 0.0000164684
Trochodendron aralioides group12 5 CH_tar_988 3 6 0.000909991
Tripterygium wilfordii NC_052233.1 5 CH_twi_164 4 4 0.0000000848376
Tripterygium wilfordii NC_052237.1 5 CH_twi_363 3 3 0.0000707743
Vaccinium macrocarpon chr9_Vaccinium_macrocarpon_Stevens_v1 5 CH_vma_245 4 4 0.000000468448
Vaccinium macrocarpon chr7_Vaccinium_macrocarpon_Stevens_v1 5 CH_vma_246 4 4 0.000000468448
Vaccinium macrocarpon chr8_Vaccinium_macrocarpon_Stevens_v1 5 CH_vma_540 3 3 0.000224033
Vigna mungo CM024074.1 5 CH_vmu_407 3 4 0.000178713
Vigna mungo CM024069.1 5 CH_vmu_619 3 6 0.00089208
Vitis vinifera chr16 5 CH_vvi_561 3 3 0.000180734
Aethionema arabicum LG-9 6 CH_aar_239 3 3 0.0000192279
Acer truncatum chr5 6 CH_acertr_511 4 17 0.0000507526
Arabidopsis lyrata scaffold_7 6 CH_aly_459 3 4 0.0000764126
Amborella trichopoda AmTr_v1.0_scaffold00013 6 CH_atr_439 3 5 0.000145609
Brassica carinata ChrC01 6 CH_bca_1640 3 7 0.000317295
Brassica napus C03 6 CH_bna_1348 3 7 0.000500649
Brassica oleracea C3 6 CH_bol_482 3 4 0.0000209937
Beta vulgaris Chr7_EL10_PGA_scaffold5 6 CH_bvu_285 3 3 0.00000996339
Camellia sinensis var. sinensis Chr4 6 CH_camsi_261 6 11 0.000000000068096
Cannabis sativa NC_044373.1 6 CH_cansat_137 6 21 0.00000000163186
Cannabis sativa NC_044373.1 6 CH_cansat_423 3 4 0.000141046
Cicer arietinum L. Ca_LG8_v3 6 CH_car_30 5 6 0.000000000162192
Corylus avellana 1 6 CH_cav_170 5 8 0.00000000291523
Chara braunii BFEA01000156 6 CH_cbr_305 2 2 0.000431562
Coffea canephora chr7 6 CH_ccan_14 8 77 1.12946e-16
Citrus clementina scaffold_3 6 CH_ccl_430 3 3 0.00000823676
Carpinus fangiana Cfa04 6 CH_cfa_286 4 5 0.00000162613
Cardamine hirsuta Chr7 6 CH_chi_394 3 3 0.00000817004
Carya illinoinensis Chr05 6 CH_cil_194 6 8 0.0000000000474697
Carya illinoinensis Chr13 6 CH_cil_712 3 3 0.000251727
Carya illinoinensis Chr14 6 CH_cil_713 3 3 0.000251727
Carica papaya supercontig_129 6 CH_cpa_50 5 6 0.0000000000569644
Chenopodium quinoa C_Quinoa_Scaffold_2081 6 CH_cqu_395 4 5 0.000000676322
Capsella rubella scaffold_7 6 CH_cru_388 3 3 0.0000208497
Daucus carota DCARv2_Chr1 6 CH_dca_449 3 3 0.0000752993
Daucus carota DCARv2_Chr1 6 CH_dca_450 3 3 0.0000752993
Durio zibethinus NW_019167893.1 6 CH_dzi_366 3 3 0.0000397677
Erigeron canadensis Conyza_canadensis_scaffold:1 6 CH_eca_664 3 5 0.000215403
Eucalyptus grandis Chr07 6 CH_egr_1001 4 6 0.0000285998
Eucalyptus grandis Chr11 6 CH_egr_321 7 7 0.0000000000000349916
Eutrema salsugineum scaffold_1 6 CH_esa_283 3 3 0.0000176058
Fragaria x ananassa Fvb2-4 6 CH_fan_501 4 7 0.00000230009
Fragaria x ananassa Fvb2-1 6 CH_fan_977 3 4 0.000302689
Gossypium hirsutum D07 6 CH_ghi_283 5 5 0.000000000125065
Gossypium hirsutum A07 6 CH_ghi_468 4 4 0.000000115645
Gossypium hirsutum D07 6 CH_ghi_469 4 4 0.000000115645
Gossypium hirsutum A07 6 CH_ghi_692 4 8 0.00000806675
Gossypium raimondii Chr01 6 CH_gra_155 5 5 0.0000000000950483
Gossypium raimondii Chr01 6 CH_gra_308 4 6 0.00000123449
Helianthus annuus HanXRQChr07 6 CH_han_1165 3 5 0.000726976
Helianthus annuus HanXRQChr01 6 CH_han_364 5 9 0.0000000105133
Helianthus annuus HanXRQChr16 6 CH_han_503 4 5 0.000000393621
Lonicera japonica GWHAAZE00000008 6 CH_lonja_446 4 4 0.000000148409
Lactuca sativa Lsat_1_v8_lg_3 6 CH_lsa_642 3 3 0.000103973
Lactuca sativa Lsat_1_v8_lg_9 6 CH_lsa_794 3 4 0.000415465
Lactuca sativa Lsat_1_v8_lg_2 6 CH_lsa_94 8 16 0.00000000000000464061
Magnolia biondii Chr07 6 CH_mbi_619 3 3 0.00000626595
Manihot esculenta Chromosome02 6 CH_mes_161 6 8 0.00000000000848171
Manihot esculenta Chromosome13 6 CH_mes_298 4 4 0.000000157323
Manihot esculenta Chromosome13 6 CH_mes_299 4 4 0.000000157323
Manihot esculenta Chromosome12 6 CH_mes_300 4 4 0.000000157323
Marchantia polymorpha scaffold_32 6 CH_mpo_75 4 6 0.000000234666
Nelumbo nucifera chr1 6 CH_nnu_530 3 8 0.000393685
Oryza sativa ssp. japonica chr09 6 CH_osa_307 4 7 0.000000808238
Petunia axillaris Peaxi162Scf00616 6 CH_pax_501 3 4 0.000133401
Prunus persica Pp08 6 CH_ppe_136 7 8 0.0000000000000472998
Pisum sativum chr3LG5 6 CH_psa_483 3 4 0.0000596255
Papaver somniferum NC_039362.1 6 CH_pso_762 3 3 0.0000178358
Papaver somniferum NC_039363.1 6 CH_pso_763 3 3 0.0000178358
Papaver somniferum NC_039358.1 6 CH_pso_830 4 19 0.0000386745
Populus trichocarpa Chr01 6 CH_ptr_815 3 5 0.000980183
Phaseolus vulgaris Chr02 6 CH_pvu_232 4 4 0.0000000785935
Quercus lobata 9 6 CH_qlo_1380 3 3 0.000143903
Quercus lobata 9 6 CH_qlo_355 7 11 0.000000000000213737
Rosa chinensis RcHm_v2.0_Chr6 6 CH_rch_106 9 12 2.19207e-19
Rosa chinensis RcHm_v2.0_Chr5 6 CH_rch_1413 3 4 0.000617469
Rhododendron simsii chr10 6 CH_rsi_109 8 10 2.97363e-17
Rhododendron simsii chr01 6 CH_rsi_420 4 4 0.000000170822
Striga asiatica scaffold108 6 CH_sas_157 4 17 0.000114065
Striga asiatica scaffold1 6 CH_sas_205 3 5 0.000455074
Striga asiatica scaffold275 6 CH_sas_28 5 9 0.00000000627979
Salix brachista GWHAAZH00000016 6 CH_sbr_241 4 4 0.0000000760245
Salix brachista GWHAAZH00000009 6 CH_sbr_679 3 5 0.000633765
Simmondsia chinensis GWHAASQ00000024 6 CH_sci_225 3 3 0.0000123968
Simmondsia chinensis GWHAASQ00000016 6 CH_sci_499 4 40 0.000802821
Sequoiadendron giganteum chr3 6 CH_sgi_1111 4 5 0.000000175498
Sequoiadendron giganteum chr5 6 CH_sgi_976 4 4 0.0000000351258
Solanum lycopersicum SL4.0ch11 6 CH_sly_464 5 38 0.00000742763
Schrenkiella parvula ch7-6 6 CH_spa_192 3 3 0.0000164684
Trochodendron aralioides group12 6 CH_tar_988 3 6 0.000909991
Tripterygium wilfordii NC_052233.1 6 CH_twi_164 4 4 0.0000000848376
Tripterygium wilfordii NC_052237.1 6 CH_twi_363 3 3 0.0000707743
Vaccinium macrocarpon chr9_Vaccinium_macrocarpon_Stevens_v1 6 CH_vma_245 4 4 0.000000468448
Vaccinium macrocarpon chr7_Vaccinium_macrocarpon_Stevens_v1 6 CH_vma_246 4 4 0.000000468448
Vaccinium macrocarpon chr8_Vaccinium_macrocarpon_Stevens_v1 6 CH_vma_540 3 3 0.000224033
Vigna mungo CM024074.1 6 CH_vmu_407 3 4 0.000178713
Vigna mungo CM024069.1 6 CH_vmu_619 3 6 0.00089208
Vitis vinifera chr16 6 CH_vvi_561 3 3 0.000180734

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001