Functional clusters
Information
- Type InterPro
- Description CO/COL/TOC1, conserved site
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Brassica carinata | ChrC07 | 5 | CH_bca_1840 | 3 | 7 | 0.000498807 |
| Helianthus annuus | HanXRQChr12 | 5 | CH_han_339 | 4 | 5 | 0.00000000517924 |
| Magnolia biondii | Chr02 | 5 | CH_mbi_629 | 3 | 5 | 0.00000778085 |
| Medicago truncatula | chr5 | 5 | CH_mtr_691 | 3 | 3 | 0.00000115214 |
| Oryza sativa ssp. japonica | chr03 | 5 | CH_osa_337 | 3 | 3 | 0.00000190363 |
| Oryza sativa ssp. japonica | chr10 | 5 | CH_osa_387 | 3 | 4 | 0.00000761253 |
| Papaver somniferum | NW_020624376.1 | 5 | CH_pso_543 | 3 | 3 | 0.00000051773 |
| Papaver somniferum | NW_020618825.1 | 5 | CH_pso_617 | 3 | 4 | 0.00000207065 |
| Sequoiadendron giganteum | chr4 | 5 | CH_sgi_1067 | 4 | 8 | 0.000000117477 |
| Solanum lycopersicum | SL4.0ch08 | 5 | CH_sly_411 | 3 | 3 | 0.00000188102 |
| Solanum pennellii | Spenn-ch08 | 5 | CH_spe_433 | 4 | 25 | 0.00000604822 |
| Vitis vinifera | chr10 | 5 | CH_vvi_183 | 4 | 4 | 0.000000000653576 |
| Zea mays | 1 | 5 | CH_zma_315 | 3 | 3 | 0.0000358405 |
| Zea mays | 1 | 5 | CH_zma_373 | 3 | 4 | 0.000143259 |
| Zea mays | 5 | 5 | CH_zma_457 | 3 | 5 | 0.000357892 |
| Brassica carinata | ChrC07 | 6 | CH_bca_1840 | 3 | 7 | 0.000498807 |
| Helianthus annuus | HanXRQChr12 | 6 | CH_han_339 | 4 | 5 | 0.00000000517924 |
| Magnolia biondii | Chr02 | 6 | CH_mbi_629 | 3 | 5 | 0.00000778085 |
| Medicago truncatula | chr5 | 6 | CH_mtr_691 | 3 | 3 | 0.00000115214 |
| Oryza sativa ssp. japonica | chr03 | 6 | CH_osa_337 | 3 | 3 | 0.00000190363 |
| Oryza sativa ssp. japonica | chr10 | 6 | CH_osa_387 | 3 | 4 | 0.00000761253 |
| Papaver somniferum | NW_020624376.1 | 6 | CH_pso_543 | 3 | 3 | 0.00000051773 |
| Papaver somniferum | NW_020618825.1 | 6 | CH_pso_617 | 3 | 4 | 0.00000207065 |
| Sequoiadendron giganteum | chr4 | 6 | CH_sgi_1067 | 4 | 8 | 0.000000117477 |
| Solanum lycopersicum | SL4.0ch08 | 6 | CH_sly_411 | 3 | 3 | 0.00000188102 |
| Solanum pennellii | Spenn-ch08 | 6 | CH_spe_433 | 4 | 25 | 0.00000604822 |
| Vitis vinifera | chr10 | 6 | CH_vvi_183 | 4 | 4 | 0.000000000653576 |
| Zea mays | 1 | 6 | CH_zma_315 | 3 | 3 | 0.0000358405 |
| Zea mays | 1 | 6 | CH_zma_373 | 3 | 4 | 0.000143259 |
| Zea mays | 5 | 6 | CH_zma_457 | 3 | 5 | 0.000357892 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |