Functional clusters
Information
- Type InterPro
- Description Rossmann-like alpha/beta/alpha sandwich fold
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Arabidopsis lyrata | scaffold_8 | 5 | CH_aly_249 | 5 | 6 | 0.000000329899 |
| Capsicum annuum | PGAv.1.6.scaffold610 | 5 | CH_can_874 | 4 | 10 | 0.000852594 |
| Carya illinoinensis | Chr02 | 5 | CH_cil_548 | 4 | 5 | 0.0000545754 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1000 | 5 | CH_cqu_1047 | 7 | 68 | 0.00093788 |
| Durio zibethinus | NW_019168048.1 | 5 | CH_dzi_615 | 5 | 24 | 0.00088155 |
| Eucalyptus grandis | Chr02 | 5 | CH_egr_826 | 5 | 9 | 0.00000106036 |
| Fragaria vesca | Fvb4 | 5 | CH_fve_605 | 5 | 18 | 0.000167715 |
| Papaver somniferum | NC_039359.1 | 5 | CH_pso_811 | 4 | 6 | 0.0000293399 |
| Papaver somniferum | NC_039359.1 | 5 | CH_pso_990 | 4 | 8 | 0.000136448 |
| Populus trichocarpa | Chr10 | 5 | CH_ptr_310 | 6 | 11 | 0.0000000734702 |
| Quercus lobata | 8 | 5 | CH_qlo_1309 | 5 | 14 | 0.0000554194 |
| Quercus lobata | 1 | 5 | CH_qlo_788 | 6 | 12 | 0.0000000946048 |
| Sequoiadendron giganteum | chr1 | 5 | CH_sgi_2519 | 5 | 21 | 0.000713375 |
| Vaccinium macrocarpon | chr3_Vaccinium_macrocarpon_Stevens_v1 | 5 | CH_vma_163 | 6 | 8 | 0.0000000213008 |
| Arabidopsis lyrata | scaffold_8 | 6 | CH_aly_249 | 5 | 6 | 0.000000329899 |
| Capsicum annuum | PGAv.1.6.scaffold610 | 6 | CH_can_874 | 4 | 10 | 0.000852594 |
| Carya illinoinensis | Chr02 | 6 | CH_cil_548 | 4 | 5 | 0.0000545754 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1000 | 6 | CH_cqu_1047 | 7 | 68 | 0.00093788 |
| Durio zibethinus | NW_019168048.1 | 6 | CH_dzi_615 | 5 | 24 | 0.00088155 |
| Eucalyptus grandis | Chr02 | 6 | CH_egr_826 | 5 | 9 | 0.00000106036 |
| Fragaria vesca | Fvb4 | 6 | CH_fve_605 | 5 | 18 | 0.000167715 |
| Papaver somniferum | NC_039359.1 | 6 | CH_pso_811 | 4 | 6 | 0.0000293399 |
| Papaver somniferum | NC_039359.1 | 6 | CH_pso_990 | 4 | 8 | 0.000136448 |
| Populus trichocarpa | Chr10 | 6 | CH_ptr_310 | 6 | 11 | 0.0000000734702 |
| Quercus lobata | 8 | 6 | CH_qlo_1309 | 5 | 14 | 0.0000554194 |
| Quercus lobata | 1 | 6 | CH_qlo_788 | 6 | 12 | 0.0000000946048 |
| Sequoiadendron giganteum | chr1 | 6 | CH_sgi_2519 | 5 | 21 | 0.000713375 |
| Vaccinium macrocarpon | chr3_Vaccinium_macrocarpon_Stevens_v1 | 6 | CH_vma_163 | 6 | 8 | 0.0000000213008 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |